Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g20
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0095 - 20030237-20031711,20031731-20033057                       28   6.6  
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092...    28   6.6  
12_02_1093 + 26023692-26023865,26023959-26024026,26024155-260241...    28   8.7  

>11_06_0095 - 20030237-20031711,20031731-20033057
          Length = 933

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 150 VVMFRPINKIGQIISFECKSKEFVRNKVVQPTSVLKP 260
           +V+ R    I Q+IS EC+ + F+      P+S L P
Sbjct: 546 MVIHRLDKDINQVISSECRLRSFIALDKAMPSSTLLP 582


>01_01_1234 -
           10007446-10007940,10008030-10008125,10008980-10009253,
           10009381-10009682,10010078-10010123,10010319-10010368,
           10011124-10011268,10012051-10012229,10012327-10012485,
           10012636-10012887,10012972-10013097,10013197-10013525,
           10014183-10014252
          Length = 840

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 528 NNTAIRGLKTSVVCGTAKS-SPAQPGYPSEDKILQIKHHRNDYAEQY 665
           N    +   TS  C T  S S  QPGYPS+ + L ++   + +  Q+
Sbjct: 510 NGGGTQSFDTSEHCSTVPSDSDEQPGYPSQFEPLHMEQTNDMFLSQF 556


>12_02_1093 +
           26023692-26023865,26023959-26024026,26024155-26024198,
           26024287-26025035,26025506-26025595,26026174-26026235,
           26026360-26026465
          Length = 430

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 225 NKVVQPTSVLKPAEKIKLYNKENKE 299
           NKV +P++V KP+E   +  KE K+
Sbjct: 124 NKVAEPSAVEKPSENADVETKEKKQ 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,049,830
Number of Sequences: 37544
Number of extensions: 303105
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)