Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g20
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 289 SLLYNLIFSAGFSTEVGCTTLFL 221
           S+LY +  +   S EV CT +FL
Sbjct: 684 SVLYKIYLNTMESHEVRCTAVFL 706


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 574 VPHTTDVFKPRIAVLFKRTPKIFKQC-LVFCHIL 476
           VP+T   F PR AV     P   + C LV  H L
Sbjct: 145 VPYTVKNFHPRCAVNNYNDPSNVRNCELVGLHDL 178


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +1

Query: 175 KSARLYHSNVKVKNLSETKWYSPLLY*NRQKKLNCTIKKIRNYSVRY*KLASKRNSEFKK 354
           +S + YH    V+   E   Y P +   R K++  +     + S +   L   RN + K+
Sbjct: 159 QSHQSYHHMDSVEYKPEIMEYKPDVEEQRYKQVEISQMTEPSSSTKSYVLEGPRNGKRKR 218

Query: 355 KLKILRNKT 381
           K   + N++
Sbjct: 219 KSSTIENES 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,119
Number of Sequences: 438
Number of extensions: 3642
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)