Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g19
         (220 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0389 - 8456957-8459917,8461941-8462267                           25   6.3  
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991...    25   8.3  

>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 123 IIRKHYFTILFLSPYSTLFWINHKKCYNSRNL 28
           + RK +  +L  S +ST+ W+N  K +  + L
Sbjct: 212 LARKVHDDLLTESAFSTVVWVNGSKSFTKKKL 243


>09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,
            9919056-9919283,9919628-9919761,9919842-9919925,
            9920007-9920297,9920569-9920901,9921029-9921171,
            9921266-9921379,9921470-9921626,9921709-9921812,
            9921914-9922074,9922158-9922474,9922574-9922855,
            9923205-9923506,9923603-9923693,9923864-9923917,
            9924052-9924128,9924213-9924372,9924473-9924557,
            9924635-9924723,9925791-9925925
          Length = 1341

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 129  YTIIRKHYFTILFLSPYSTLFWINHKKCYNSRNL 28
            YT + K+++TI+    + T+FW   +K  N ++L
Sbjct: 1088 YTAV-KYFYTIVIALLFGTMFWGVGRKRSNQQDL 1120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,496,755
Number of Sequences: 37544
Number of extensions: 57144
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)