Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g19
         (220 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-6|AAN63416.2|  342|Caenorhabditis elegans Serpentine rece...    26   3.2  
AL032637-17|CAD60427.1|  294|Caenorhabditis elegans Hypothetical...    25   7.3  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    25   7.3  
Z78060-3|CAB01488.2|  215|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>U37429-6|AAN63416.2|  342|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 69 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 2   RYRTIYLMVKFLLL*HFLWFIQNSVEYGD 88
           RYR ++++V FL+   F+WF+     Y +
Sbjct: 136 RYRRLFVLVGFLIPLIFMWFMIPCKSYAE 164


>AL032637-17|CAD60427.1|  294|Caenorhabditis elegans Hypothetical
           protein Y43F8C.19 protein.
          Length = 294

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 129 YTIIRKHYFTILFLSPYSTLFW 64
           YT++  + FTI+F+  Y    W
Sbjct: 106 YTVVAVNRFTIIFMQKYHNHIW 127


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 220 FFFCQTTQNKIYSPKIISKTLKP 152
           F+ C  T +K++   +ISK + P
Sbjct: 478 FYLCSRTYSKVWQISVISKGINP 500


>Z78060-3|CAB01488.2|  215|Caenorhabditis elegans Hypothetical
           protein C34D1.4 protein.
          Length = 215

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 126 TIIRKHYFTILFLSPYSTLFWINHKKCYNSRNL 28
           T+  KHY  ++F     TL ++    C++ R+L
Sbjct: 12  TLAEKHYRHLIFSLSLHTLIYLLLHMCFSPRDL 44


>U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical
           protein C01B10.8 protein.
          Length = 656

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 108 YFTILFLSPYSTLFWINH 55
           Y  +    P+ T FWINH
Sbjct: 154 YIIVTLAQPHITEFWINH 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,509,587
Number of Sequences: 27780
Number of extensions: 68454
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)