Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g17
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    29   0.34 
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   4.2  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    25   5.5  
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    25   5.5  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    24   9.6  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.6  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   9.6  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 139 KLILP--GSWYTTATPQVTQALLEHCRSDCTYWSC 237
           K ILP  G W +   P+   A+L +C S    WSC
Sbjct: 280 KSILPSAGFWQSFLAPKFFDAVLAYCLSQLFNWSC 314


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 133 SSKLILPGSWYTTATPQVTQALLEHCRSDCTYWSCC 240
           +S L++P   Y      V  + +EH R DC   + C
Sbjct: 880 NSALLIPSILYHIENLLVASSFIEHFRLDCKIDTAC 915


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 281 ESNVPWANDLVALVYQEKSSPWKFTVDRFNQATTSIS 391
           ++ +PW+     L    KS  W     R +++ TS+S
Sbjct: 303 DNKIPWSKKGSVLEISTKSITWSRKARRISKSQTSVS 339


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 383 SISHFVFGKEGVTPLEIKSRSQQD 454
           SI+H  FGKE    +E K  +QQ+
Sbjct: 168 SITHMTFGKEFTKAVERKQIAQQE 191


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 359 DRFNQATTSISHFVFGKEGVTPLEIKSRSQQ 451
           D FN  T  ++  + G EG+ PLE  S   Q
Sbjct: 189 DTFNSETIDLAEVLIGAEGI-PLEFLSEFVQ 218


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -2

Query: 456 MSCCDLDFISNGVTPSFPNTKWLIDVVAW 370
           +SC  ++F   GV P      W +  ++W
Sbjct: 187 LSCVPVEFQLTGVKPENSKVGWRLTKISW 215


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 149 SQDHGTRQQPRKSRKLFWS 205
           S D G    PRK+R  +WS
Sbjct: 236 SSDSGNTTAPRKNRHRYWS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,300
Number of Sequences: 5004
Number of extensions: 35357
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)