Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g17
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879...    29   1.8  
02_01_0422 - 3084940-3087072                                           28   3.1  
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412...    28   3.1  
11_01_0806 - 7172982-7173147,7173243-7173370,7173477-7173566,717...    28   4.1  
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305...    27   5.4  
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    27   7.2  

>08_02_1014 -
           23586552-23587224,23587402-23587463,23587735-23587950,
           23588125-23588209,23589232-23589389,23589505-23589625,
           23590081-23590243,23590330-23590415,23590660-23590742,
           23590816-23591677,23593266-23593693
          Length = 978

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +1

Query: 154 GSWYTTATPQVTQALLEHCRSDCTYWSCCCLCQTQSRGPKLVR 282
           G WY T   QV    LE+  S C Y      C    R P  VR
Sbjct: 725 GKWYKTDDSQVKPVSLENVMSKCAYMLLYARC--SPRAPSSVR 765


>02_01_0422 - 3084940-3087072
          Length = 710

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 441 LDFISNGVTPSFPNTKWLIDVVAWLKRSTVNFHGE 337
           LDF SN  T   P + +    + WL+ S+   HG+
Sbjct: 343 LDFASNHFTGKIPESIYSCSNLTWLRLSSNRLHGQ 377


>01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,
            4129129-4129233,4129987-4130127,4130223-4130285,
            4130925-4131152,4131250-4131333,4132000-4132157,
            4132252-4132777,4133641-4133700,4133904-4134026,
            4134906-4135181,4135282-4135347,4135500-4135631,
            4135977-4136798,4137026-4137306,4137564-4137796,
            4138022-4138260,4138367-4138558,4138808-4139080,
            4139186-4139332
          Length = 2078

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 351  NFHGEDFSW*TRAT-RSLAQGTFDSN 277
            +F+GED+ W T  T R LA G+F +N
Sbjct: 1354 DFNGEDWEWGTYKTQRVLASGSFSNN 1379


>11_01_0806 -
           7172982-7173147,7173243-7173370,7173477-7173566,
           7174390-7174482,7174663-7174743,7175881-7175954,
           7176024-7176051
          Length = 219

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 91  KKTH*WVLSSTDSTSSKLILPGSWYTTATPQVTQALLEHCRSDC 222
           KK + W +   DS    L        T+ P + Q L++  R++C
Sbjct: 168 KKVYAWTVDDADSMKRMLYEHVDAIVTSNPSLLQQLMQETRTEC 211


>02_01_0417 -
           3048519-3048710,3048903-3050600,3050622-3050909,
           3052308-3052377,3052417-3052668,3053235-3055297
          Length = 1520

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 441 LDFISNGVTPSFPNTKWLIDVVAWLKRSTVNFHGE 337
           +DF SN  T + P + +    + WL+ S+   HG+
Sbjct: 354 IDFGSNNFTGTIPESIYSCSNLTWLRLSSNRLHGQ 388


>12_02_0133 -
           14057469-14057497,14057516-14057581,14057770-14058363,
           14058450-14058570,14058926-14059320,14059410-14059534,
           14059646-14059876,14060012-14060484,14060587-14060693,
           14060842-14061172,14061222-14061250,14061345-14061901,
           14062170-14062255,14062344-14062406,14062646-14063001,
           14063101-14063356
          Length = 1272

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +2

Query: 17  DGPSGEIPKMYKFTNHLSNAKLVLVRRHIDGSSAALIVLRQNSYSQDHGTRQQPRKSRKL 196
           +  +G  P     T   S  +  L RRH DGS  + I L  N   +    R+ P  SR+L
Sbjct: 2   ESEAGSAPNGCTSTVKGSEERHSLERRHDDGSCISEIKLISNMVVKKKRGRRAPPSSRRL 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,236,573
Number of Sequences: 37544
Number of extensions: 232432
Number of successful extensions: 596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)