Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g17
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U52003-8|AAM97990.1|  441|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U52003-7|AAM97989.1|  555|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U56966-1|AAA98717.1|  208|Caenorhabditis elegans Ets class trans...    27   8.6  
U40942-7|AAC47067.2|  218|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical
           protein K06H6.4 protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 88  GKKTH*WVLSSTDSTSSKLILPGSWYTTATPQVTQALLEHCRSD--CTYWSC 237
           G + H W  S+TD T    + P S + T T +    L  +  S   C Y+ C
Sbjct: 70  GIRNHNWKPSTTDLTKVAALPPESLFNTTTDENEDPLFAYNSSTMYCRYYDC 121


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
            D2085.1 protein.
          Length = 2198

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +1

Query: 1    ESLKI*RPKWRDSENVQIYESF 66
            ESLKI +P+W+ SEN++  ++F
Sbjct: 1058 ESLKISQPQWKKSENMEDAKNF 1079


>U52003-8|AAM97990.1|  441|Caenorhabditis elegans Hypothetical
           protein ZK381.5b protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 163 YTTATPQVTQALLE-HCRSDCTYWSCCCLCQTQSRGPKLVRV 285
           +++ TP ++Q  L  H  ++C    CCC+C     G K  RV
Sbjct: 198 FSSDTPHMSQGDLHWHASAECF---CCCVCSKNLLGVKYSRV 236


>U52003-7|AAM97989.1|  555|Caenorhabditis elegans Hypothetical
           protein ZK381.5a protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 163 YTTATPQVTQALLE-HCRSDCTYWSCCCLCQTQSRGPKLVRV 285
           +++ TP ++Q  L  H  ++C    CCC+C     G K  RV
Sbjct: 312 FSSDTPHMSQGDLHWHASAECF---CCCVCSKNLLGVKYSRV 350


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.7 protein.
          Length = 1192

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 34  DSENVQIYESFIEC*ISFGKKTH*WVLSSTDS-TSSKLILPGSWYTTATPQVTQALLEHC 210
           + E   I+++F+E  ++   K   W + S    T  K++LPG  Y+ +  + TQA++   
Sbjct: 755 EEELKTIFKNFLESYLAINTKLS-WPMESLQPRTERKVVLPGQ-YSESRKKRTQAIMSQV 812

Query: 211 RSDCT 225
           ++  T
Sbjct: 813 QTPPT 817


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +2

Query: 17  DGPSGEIPKMYKFTNHLSNAKLVLVRRHIDGSSAA 121
           D P G  P  Y F  HLSN   VL+R   DG   A
Sbjct: 770 DFPIG--PPGYGFPEHLSNLDEVLIRAQGDGECPA 802


>U56966-1|AAA98717.1|  208|Caenorhabditis elegans Ets class
           transcription factorprotein 5 protein.
          Length = 208

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 109 VLSSTDSTSSKLILPGSWYT-TATPQ 183
           +LSST STSS  I+P S  T  +TPQ
Sbjct: 171 ILSSTSSTSSNQIIPPSTATYWSTPQ 196


>U40942-7|AAC47067.2|  218|Caenorhabditis elegans Hypothetical
           protein K02E10.1 protein.
          Length = 218

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 59  NHLSNAKLVLVRRHIDGSSAALIVLRQNSYSQDH 160
           NHL   K+V+V  H  G S  L+   +NS+  DH
Sbjct: 4   NHLF--KIVVVGDHNCGKSCILLRFAENSFRMDH 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,460,524
Number of Sequences: 27780
Number of extensions: 208091
Number of successful extensions: 533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)