Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g14
         (205 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74475-1|CAA98960.1|  107|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      25   5.6  
AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical...    25   7.4  
Z82055-6|CAB04851.1|  365|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z74475-1|CAA98960.1|  107|Caenorhabditis elegans Hypothetical
           protein R04F11.2 protein.
          Length = 107

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 78  PPQPVSPLIRGLRFAFLIAGIIYARGKQKLYNKMEASYRE 197
           P   +SPLIR  R+A L  G++Y   + +   +  A  RE
Sbjct: 16  PTVTISPLIRFGRYAALSLGVVYGFFRLRQIREYHADIRE 55


>Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical
           protein K05D4.2 protein.
          Length = 338

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 36  SVLFDEVIMSLPYGPPQPVSPLIRGLRFAFLIAGIIYA 149
           SV+ + ++++L  G P  V    + L F+F   G++Y+
Sbjct: 21  SVILNVILLTLIKGMPNKVFGNYKYLMFSFSALGVVYS 58


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 6    FDRSPLKLHFSVLFDEVIMSLPYGPPQPVSPLIRG 110
            FD    KL  S+   +  ++ P  PP P+SP+ RG
Sbjct: 1699 FDNISSKLRSSLAISK--LAPPPRPPNPISPINRG 1731


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 6    FDRSPLKLHFSVLFDEVIMSLPYGPPQPVSPLIRG 110
            FD    KL  S+   +  ++ P  PP P+SP+ RG
Sbjct: 1699 FDNISSKLRSSLAISK--LAPPPRPPNPISPINRG 1731


>Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical
           protein T16H12.8 protein.
          Length = 363

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 196 SLYDASILL*SFCLPRAYIIPAI 128
           S +  SILL S C+   Y IPAI
Sbjct: 267 SKFQRSILLQSICISLTYAIPAI 289


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 6    FDRSPLKLHFSVLFDEVIMSLPYGPPQPVSPLIRG 110
            FD    KL  S+   +  ++ P  PP P+SP+ RG
Sbjct: 1699 FDNISSKLRSSLAISK--LAPPPRPPNPISPINRG 1731


>AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical
           protein C18G1.1 protein.
          Length = 136

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 112 KPLINGETGCGGP 74
           +PLI GE G GGP
Sbjct: 117 RPLIEGEPGAGGP 129


>Z82055-6|CAB04851.1|  365|Caenorhabditis elegans Hypothetical
           protein T26H2.6 protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 203 FFFSIRCFHFVVKLLLAPSIYNSC 132
           +FF  R  +FV  +L+   +Y  C
Sbjct: 131 YFFGWRLLYFVFSMLIVAVVYGGC 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,848,160
Number of Sequences: 27780
Number of extensions: 80162
Number of successful extensions: 254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)