Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g08
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    27   2.7  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    26   4.7  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    26   6.1  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   6.1  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.1  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   6.1  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.1  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   8.1  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.1  

>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 214 IMAGTVVSCLKVVDVFTCSFTFLLAHAKKCCTKKVRL 104
           ++ G V   L +    TC + FLL HAK  C+  VRL
Sbjct: 140 VVWGVVCRALGLSLERTC-YLFLLGHAKSICSAAVRL 175


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = -1

Query: 711 SHSGKTGVLAHLTEYVSDLSSPAHSLPT-----SQKSPGNPVLQLHLYNWQQLLSKILRL 547
           SHSG    LA L+  ++ +SS   S+       + ++PG  + Q+ L+ W  +++ IL L
Sbjct: 144 SHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLL 203


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 585 IDAIEELDSLDSFVMLEDYGLEKKGQIHTLS 677
           I  I  L  +D  ++LED    +  Q+HTLS
Sbjct: 43  ISRIVSLYGIDEIILLEDPEYVQNTQVHTLS 73


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 370 NLVNLTFLRLNPHLIQYQIF*ERTKNLMENM 462
           N  N+T+LR N   +++ +F     N++EN+
Sbjct: 191 NFTNITYLRDNVWNLEHSVFAPHGDNVIENL 221


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 370 NLVNLTFLRLNPHLIQYQIF*ERTKNLMENM 462
           N  N+T+LR N   +++ +F     N++EN+
Sbjct: 191 NFTNITYLRDNVWNLEHSVFAPHGDNVIENL 221


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 468 DSFNNHVLALVKFKPPKDIIFGCILTIISEFWTITA 575
           D  +N V +L+   PPKDI F  ++T    FW  ++
Sbjct: 267 DPADNTVASLIHALPPKDITFYLLMT----FWQFSS 298


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 370 NLVNLTFLRLNPHLIQYQIF*ERTKNLMENM 462
           N  N+T+LR N   +++ +F     N++EN+
Sbjct: 155 NFANITYLRDNVWNLEHSVFAPHGDNVVENL 185


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 510 PPKDIIFGCILTIISEFWTITAASCIDAIEELDSLDSFV 626
           P   +I  CI++I+  F T      +DA+  + ++ +F+
Sbjct: 403 PVNAVICNCIISILILFLTFAGTVTLDAVFSVGAVAAFI 441


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = +3

Query: 285 KPSKKTRPTMRFFEYNQTESSFYELGIIQSGKLNISQAKS---TPDTISDILG----KDK 443
           +P +K         Y Q ++SF  L   Q+ + NIS   S   TP + S   G    K+K
Sbjct: 285 QPPQKASVLGTVNNYRQYQNSFISLNDYQAAQSNISSPSSRFPTPYSPSVPFGTYQEKEK 344

Query: 444 KFDGEYAEDSF 476
            +  ++AE S+
Sbjct: 345 SYSQDHAELSY 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,996
Number of Sequences: 5004
Number of extensions: 68222
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)