Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g08
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0279 - 27410659-27411635,27411793-27411933,27412035-27412383     29   2.8  
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773...    29   4.8  
01_03_0171 - 13419944-13421362                                         28   8.5  

>02_05_0279 - 27410659-27411635,27411793-27411933,27412035-27412383
          Length = 488

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +3

Query: 585 IDAIEELDSLDSFVMLEDYGLEKKGQIHTLSDVQVHP 695
           +DA+E L SL SF  +ED   +KKGQ    ++++VHP
Sbjct: 433 VDAVETLASLASFKQVEDDD-DKKGQ----TEMKVHP 464


>10_08_0829 -
           20871810-20872011,20873226-20873359,20873480-20877313,
           20878057-20878177,20878414-20878451,20879096-20879218,
           20879308-20879505,20880270-20880356
          Length = 1578

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 711 SHSGKTG-VLAHLTEYVSDLSSPAHSLPTSQKSPGNPVLQLHL 586
           ++SG  G V  +LT Y+S L S A SLP  +   G  +LQL++
Sbjct: 98  TNSGILGEVFLNLTNYLSSLESTAISLPLKRCDSGT-ILQLNI 139


>01_03_0171 - 13419944-13421362
          Length = 472

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 256 VLCVVCL*YFVWSGIMAGTVVSCLKVVDVFTCSFTFLLAHA 134
           VLCVV L +  W  +     V  L +V V  C    LLA A
Sbjct: 240 VLCVVALVWLAWPFLFPAAAVIGLALVGVAGCCAFLLLAAA 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,931,639
Number of Sequences: 37544
Number of extensions: 392842
Number of successful extensions: 871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)