Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g06
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    24   5.5  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    24   5.5  

>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 53  ADECHIYFIDHS*K 12
           +++ H+YF+DHS K
Sbjct: 253 SEDYHVYFVDHSTK 266


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 145 SPTLYHRAFDIFFFTIQMHRIKMI*LQERSNYKNE*Y*LNINVPFI 282
           +PTLY++      F  ++     I ++  S+Y ++ Y  NIN  F+
Sbjct: 531 TPTLYNKMIRAPLFKHEVPPTDFILIRNSSSYGSKYYLKNINHMFV 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,034,167
Number of Sequences: 5004
Number of extensions: 14875
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)