Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g06
         (297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine rece...    25   9.7  

>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical
           protein D2045.2 protein.
          Length = 1792

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 174 YIFLYNSNA*NKNDII 221
           +IF YNS A +KND+I
Sbjct: 765 FIFQYNSTALDKNDVI 780


>U64836-1|AAX22289.1|  321|Caenorhabditis elegans Serpentine
           receptor, class x protein92, isoform b protein.
          Length = 321

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 226 LVIISFLFYAFEL*RKIYQMLYGTVLGC 143
           + II    Y F + +KIY++L  +  GC
Sbjct: 130 ITIILVFIYIFRIAKKIYELLPESAKGC 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,746,799
Number of Sequences: 27780
Number of extensions: 84728
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)