Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2g04
(679 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap a... 208 2e-54
AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A recept... 208 2e-54
Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical pr... 80 1e-15
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z73969-21|CAI46568.2| 272|Caenorhabditis elegans Hypothetical p... 29 4.0
Z70783-12|CAI46596.2| 272|Caenorhabditis elegans Hypothetical p... 29 4.0
Z81064-1|CAB02962.2| 655|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical pr... 27 9.3
AF026204-2|AAB71251.2| 247|Caenorhabditis elegans Hypothetical ... 27 9.3
>U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap and
gate-16 familyprotein 1 protein.
Length = 123
Score = 208 bits (509), Expect = 2e-54
Identities = 94/116 (81%), Positives = 106/116 (91%)
Frame = +2
Query: 101 MKFQYXEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 280
MK+ Y EE++FEKR+AEG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60
Query: 281 YFLIRKRIHLRPEDALFFFVNNVXPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 448
YFLIRKRI LRPEDALFFFVNNV P T TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 61 YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
>AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A
receptor-associated protein protein.
Length = 123
Score = 208 bits (509), Expect = 2e-54
Identities = 94/116 (81%), Positives = 106/116 (91%)
Frame = +2
Query: 101 MKFQYXEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 280
MK+ Y EE++FEKR+AEG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60
Query: 281 YFLIRKRIHLRPEDALFFFVNNVXPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 448
YFLIRKRI LRPEDALFFFVNNV P T TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 61 YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
>Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical
protein ZK593.6 protein.
Length = 130
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/114 (33%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Frame = +2
Query: 113 YXEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 289
+ E F +R+ + E+IR + P++VPVI+E+ R L +D+ K+LVP +TV + +
Sbjct: 17 FKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSI 76
Query: 290 IRKRIHLRPEDALFFFVN-NVXPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 448
+R+R+ L P+ A F VN S +M +LY + D D F+Y+ ++ + +G
Sbjct: 77 VRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 173 ISCGFFRPQPFSSQMNVLLXIGISC*YFITHCNF 72
I G P SS MN+LL +S F HC +
Sbjct: 353 IENGIISPSNSSSSMNLLLIFAVSTLIFSAHCQY 386
>Z73969-21|CAI46568.2| 272|Caenorhabditis elegans Hypothetical
protein ZK856.14 protein.
Length = 272
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 481 FTLSDHMVKFNLSLRLKLCIILWYFFIINWHIIXYLSSYE*YETFQASKGLLWFHIFVLV 660
F+LSD N+S+ II++ + W I+ F + +WFH F L+
Sbjct: 2 FSLSDES---NISIFFCFYIIMFIVTMNLWRILKIKGKLVELNAFPCASSFIWFHFFGLI 58
>Z70783-12|CAI46596.2| 272|Caenorhabditis elegans Hypothetical
protein ZK856.14 protein.
Length = 272
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 481 FTLSDHMVKFNLSLRLKLCIILWYFFIINWHIIXYLSSYE*YETFQASKGLLWFHIFVLV 660
F+LSD N+S+ II++ + W I+ F + +WFH F L+
Sbjct: 2 FSLSDES---NISIFFCFYIIMFIVTMNLWRILKIKGKLVELNAFPCASSFIWFHFFGLI 58
>Z81064-1|CAB02962.2| 655|Caenorhabditis elegans Hypothetical
protein F16B12.1 protein.
Length = 655
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 182 DLDISCGFFRPQPFSSQMNVL-LXIGISC*YFITHCNF 72
D D SC FF + FSS+ +L L C Y H F
Sbjct: 364 DPDCSCNFFNDKTFSSEGKMLNLSFPAHCAYIYCHFQF 401
>Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical
protein F46B6.7 protein.
Length = 614
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 386 QEHHDEDFFLYIAFSDENVYGN*FQIIHFQIVLHYLTI 499
+E D F L F N GN +IIH ++H+L +
Sbjct: 296 REREDTSFQLQCIFCRYNARGNRSKIIHHLYMIHHLNL 333
>AF026204-2|AAB71251.2| 247|Caenorhabditis elegans Hypothetical
protein C30E1.6 protein.
Length = 247
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 478 SFTLSDHMVKFNLSLRLKLCIILWYFFII 564
SFT+ + + F++ L KL +++++FF I
Sbjct: 116 SFTIPNFSISFSIFLWAKLQVLIYFFFYI 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,920,360
Number of Sequences: 27780
Number of extensions: 280109
Number of successful extensions: 769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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