Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g03
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    33   0.002
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.9  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 31  MSKYNE*IRYILKFYYKKDKLTTQDVKKNCDVYG 132
           M    E  R+IL FY++K K  +Q  KK C VYG
Sbjct: 1   MENQKEHYRHILLFYFRKGKNASQAHKKLCAVYG 34


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 652 MLWIVLNIIEGCS 690
           ++WIVL +I GCS
Sbjct: 8   IMWIVLVLISGCS 20


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 253 SSKNNGTYTRLNAQYRRENTYPPKNNRLRKKL 158
           S  N   +   N +Y   N Y   NN   KKL
Sbjct: 84  SLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKL 115


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +3

Query: 369 GNQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLI 488
           GN ++   G C+ L    W++  ++ EA+  ++ +  T +
Sbjct: 214 GNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTV 253


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 28  KMSKYNE*IRYILKFYYKKDKLTTQDVKKNCDVY 129
           K S YN    Y  K YYK   +  + +     +Y
Sbjct: 90  KYSNYNNYNNYNKKLYYKNYIINIEQIPVPVPIY 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,928
Number of Sequences: 438
Number of extensions: 4946
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)