Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g02
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    41   2e-04
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    32   0.071
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    29   0.87 
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    27   2.0  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   2.0  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   2.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   4.7  

>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 2/205 (0%)
 Frame = +1

Query: 49  DLNFFCKELPKIELHAHLNGSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRNL 228
           D+  F ++LPK ELH HL G+L     L+L        I  K ++ ++E +  + +  +L
Sbjct: 3   DIERFIEKLPKAELHLHLEGTLEAELKLKLSH---RNKIPLKQSS-IEEIK-ESYNFHDL 57

Query: 229 SECFQVFSIAHSLTSTSEALVMATELTLQEFQEDGCCYIELRSTPR--DTQYITKKQYID 402
           +   +V+     L    +         L++       Y E+   P+    + I+ +  I 
Sbjct: 58  ASFLEVYYEGVELLLHEQDFYDLCYQYLRKAASQNVVYAEMFFDPQLHTRRGISFETVIK 117

Query: 403 SIIRAMEKPXXXXXXXXXXXXXXXRASQLQEVEEIADIAIERHKIHPDTVVGIELSGNPA 582
            +IRA +                 R    +  EE  + ++     +   ++GI L  N  
Sbjct: 118 GLIRARDDAMRDFHIYSQLIMCFIREMSFENAEETLNASLP----YKSEIIGIGLDSNEE 173

Query: 583 VGNFGDFIPALNRARQSGLKVTLHC 657
                 F+    RARQ G ++T HC
Sbjct: 174 NNPPIKFLKVFQRARQLGYRLTCHC 198


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 32.3 bits (70), Expect = 0.071
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 106 GSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRNLSE--CFQVFSIAHSLTSTS 279
           GSL+ A +  LQ    +AG+SD  +  +D+ Q+ A D  +L     FQV +  +    T 
Sbjct: 117 GSLNLAVLPNLQELQFNAGLSDSDSVVIDDTQLQAIDGISLDSVTTFQVTNNRYIQEITM 176

Query: 280 EALVMATELTL 312
           E L  A  + +
Sbjct: 177 EGLESAQNIQI 187


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 61  FCKELPKIELHAHLNGSLSQATMLQLQR 144
           F ++LPK E H HL G LS   + +L +
Sbjct: 9   FIRKLPKCEHHVHLEGCLSPDLVFRLAK 36


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 125 LCFSFKGIMSTLAYLIKQTHFSTN 196
           LC SFK I  T AY ++  H ++N
Sbjct: 13  LCHSFKSIPRTSAYAVRFAHHTSN 36


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 85  ELHAHLNGSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRNLSE 234
           E+  HL G++    + Q    Y++  +SD T    D    GA D  +L E
Sbjct: 468 EVTEHLRGNMENIEIGQFMEIYLNVSLSDVTEKLKDAPIHGAPDRPSLVE 517


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/50 (22%), Positives = 28/50 (56%)
 Frame = +1

Query: 277 SEALVMATELTLQEFQEDGCCYIELRSTPRDTQYITKKQYIDSIIRAMEK 426
           SE  +   E +L+ F+E+G  YI++        Y+  K++ +++++  ++
Sbjct: 141 SECHLRCAERSLKVFEENGGIYIKIGQHLSAMGYVIPKEWTNTMVKLQDR 190


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = +1

Query: 49  DLNFFCKELPKIELHAHLNGSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGA-----G 213
           DLN +  E+   E+  +++ S    T   +  YY         ++   ++  G       
Sbjct: 484 DLNPYNVEVDIPEISLNISDS-KIPTSAYMPSYYSAVIFPSSISSIFQKYNYGGKYWCPS 542

Query: 214 DTRNLSECFQVFSIAHSLTSTSEALVMATELTLQEF 321
            + +  + F+ FS+A S+TST E  + +T    Q+F
Sbjct: 543 PSLSTEDLFESFSVAESVTSTDED-ICSTNFIQQDF 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,576
Number of Sequences: 5004
Number of extensions: 60038
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)