Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g02
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.71 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.71 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   0.94 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
 Frame = -1

Query: 689 SSTSSGLHTSPQCSVTLSPDCLALFKAGIKSPKFP------TAGLPLNSIPTTVSG 540
           +S  S     PQ  + + PD  +L   G  SP  P      TAG   N + T+ SG
Sbjct: 34  NSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSG 89


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
 Frame = -1

Query: 689 SSTSSGLHTSPQCSVTLSPDCLALFKAGIKSPKFP------TAGLPLNSIPTTVSG 540
           +S  S     PQ  + + PD  +L   G  SP  P      TAG   N + T+ SG
Sbjct: 34  NSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLSTSPSG 89


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 574 NPAVGNFGDFIPALNRARQSGLKVTL 651
           +P  G   DF   + RA+  GLKV L
Sbjct: 93  DPVYGTLADFDRLVRRAKSLGLKVIL 118


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 414 PYNTINILLLCYVLCVTWST 355
           P N IN++LL  ++ + W T
Sbjct: 76  PVNNINLILLQNIIDICWIT 95



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 247 ILGNILINFLYLQ 209
           ILG+IL+ F Y+Q
Sbjct: 373 ILGSILVPFFYVQ 385


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 670 CILLHNAVLL*VQIVLLYSKLV*NLQN 590
           CI +   V+  + I+L YS+L+ +++N
Sbjct: 223 CIFIWAYVIPLIFIILFYSRLLSSIRN 249


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 670 CILLHNAVLL*VQIVLLYSKLV*NLQN 590
           CI +   V+  + I+L YS+L+ +++N
Sbjct: 223 CIFIWAYVIPLIFIILFYSRLLSSIRN 249


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -2

Query: 406 YYQYIASLLCTVCHVEYFSAQYNNTH 329
           ++Q + S +C +CH  + +    N H
Sbjct: 395 HFQPLNSAVCALCHKVFRTLNSLNNH 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,198
Number of Sequences: 438
Number of extensions: 4416
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)