Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g01
         (361 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5TCT4 Cluster: RNA binding motif protein 34; n=1; Homo...    33   2.0  
UniRef50_Q4YU14 Cluster: Putative uncharacterized protein; n=1; ...    31   8.0  

>UniRef50_Q5TCT4 Cluster: RNA binding motif protein 34; n=1; Homo
           sapiens|Rep: RNA binding motif protein 34 - Homo sapiens
           (Human)
          Length = 211

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 76  YYLMMRKCLSRKSVTILCVLRLTIHLFQTGTVS 174
           + LM+R CLS  S T+ C+ R TI+ +++   S
Sbjct: 125 FRLMLRPCLSISSNTLYCIYRFTIYFWESALAS 157


>UniRef50_Q4YU14 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 67

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 58  FMYFRLYY-LMMRKCLSRKSVTILCVLRLTIHLF 156
           F+Y  +Y+ +   K L+R ++ ++C+LR +I LF
Sbjct: 13  FVYIFIYFHICCNKSLNRYTIPLICILRFSIFLF 46


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,904,396
Number of Sequences: 1657284
Number of extensions: 3592282
Number of successful extensions: 6393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6392
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12367962079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)