Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2g01
         (361 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.31 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.31 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   3.8  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.31
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 227 INNRFCNKYLIYNLKYISPLGLIES**IVWLL 322
           +   +CNK +  NL+++  L  +E    +WLL
Sbjct: 94  VTRAYCNKKIDRNLQFVVSLPEVERVQWIWLL 125


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.31
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 227 INNRFCNKYLIYNLKYISPLGLIES**IVWLL 322
           +   +CNK +  NL+++  L  +E    +WLL
Sbjct: 94  VTRAYCNKKIDRNLQFVVSLPEVERVQWIWLL 125


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 361 FFFYNYRALFYITQQPNYL 305
           ++  NY   +Y   QP+YL
Sbjct: 300 YYAQNYAPTYYGQMQPDYL 318


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,169
Number of Sequences: 336
Number of extensions: 1135
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7299165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)