Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f24
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   197   7e-52
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   110   1e-25
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   105   5e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    99   2e-22
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    28   0.71 
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   3.8  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   6.7  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   6.7  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.8  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   8.8  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  197 bits (481), Expect = 7e-52
 Identities = 86/122 (70%), Positives = 100/122 (81%)
 Frame = +2

Query: 146 MRXIVHIQAGQCGNQIGAKFWEVISDXHGXDATGAYSGDSDLQLERINVYYNEXSXGKYV 325
           MR IVHIQAGQCGNQ+GA FW  I+D HG D+ G Y G S+ Q ER+NVY+NE + GKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 326 PRAVMVDLEPGTMDSVRSGPFGQIFRPDNFXFGQSGAGNNWAKGHYXXGAELVDSVLDVV 505
           PRAV+VDLEPGTMD+V+SG FG +FRPDN  +GQSGAGN WAKGHY  GAEL D+VLDVV
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120

Query: 506 RK 511
           R+
Sbjct: 121 RR 122


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  110 bits (265), Expect = 1e-25
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
 Frame = +2

Query: 146 MRXIVHIQAGQCGNQIGAKFWEVISDXHGXDATGAYSGDSDLQLER--INVYYNEXSXGK 319
           MR I+ I  GQ G QIG   WE+    HG    G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 320 YVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFXFGQSGAGNNWAKGHYXXGAELVDSVLD 499
           YVPR++ VDLEP  +D VR+GP+  +F P+    G+  A NN+A+GHY  G ELVD V D
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 500 VVRK 511
            +R+
Sbjct: 121 KIRR 124


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  105 bits (251), Expect = 5e-24
 Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
 Frame = +2

Query: 146 MRXIVHIQAGQCGNQIGAKFWEVISDXHGXDATGAYSGDSDLQLER------INVYYNEX 307
           MR ++ +  GQ G QIG   WE+    HG    G  + +S++             +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 308 SXGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFXFGQSGAGNNWAKGHYXXGAELVD 487
             GK+VPR++ VDLEP  +D VR+GP+  +F P+    G+  A NN+A+GHY  G E++D
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120

Query: 488 SVLDVVRK 511
           SVL+ +R+
Sbjct: 121 SVLERIRR 128


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =   99 bits (238), Expect = 2e-22
 Identities = 41/121 (33%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
 Frame = +2

Query: 149 RXIVHIQAGQCGNQIGAKFWEVISDXHGXDATGAYSGDSDLQLERINVYYNEXSXGKYVP 328
           R I+ +QAGQCGNQIG++FW+ +   HG    G     +   ++R +V++ +    +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 329 RAVMVDLEPGTMDSVRSGPFGQIFRPDNFXFGQS--GAGNNWAKGHYXXGAELVDSVLDV 502
           RA+++DLEP  ++++ S  +G ++ P+N    ++  GAGNNWA G Y     + + ++D+
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121

Query: 503 V 505
           +
Sbjct: 122 I 122


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 438 PAPDCPKXKLSGRKICPNGPERTESMVPGSRS 343
           P+   PK  L  R I PNGPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 214 YFPELCSDLIPALTRLDVDDXPHDCTKNLEPPESN 110
           +F E+   + P   +LD+DD  +     + P E+N
Sbjct: 36  FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 111 FDSGGSKFLVQS*GXSSTSRRVNAGIRSEQSSGK*SRTXTALTPRVLTAATPT 269
           F S  S     S   +STS RV++  ++  SSG  + T   +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 111 FDSGGSKFLVQS*GXSSTSRRVNAGIRSEQSSGK*SRTXTALTPRVLTAATPT 269
           F S  S     S   +STS RV++  ++  SSG  + T   +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -2

Query: 455 LSPSYSPPQTVRRXSCPVGRFAQTARNGRSPWFQAQGPPS 336
           LSPS++PP  V+        F  ++   +  W +    P+
Sbjct: 222 LSPSFAPPSNVKSPVQQHRSFVSSSARAKKNWGRQSNSPN 261


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 171 AWMWTXSLMIALKIWNPPNRI 109
           AW+W  +LM+    +  PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,522
Number of Sequences: 5004
Number of extensions: 35958
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)