Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f24
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.80 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 0.80
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 391 PKRPGTDGVHGSRLKVHH 338
           P+ PGT  ++ ++LK HH
Sbjct: 139 PREPGTPRINFTKLKRHH 156


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 413 SCPVGRFAQTARNGRSPWFQAQGPPSQLAG 324
           +CP   +   A+ G  P     GP ++L G
Sbjct: 263 ACPTPEYRWYAQTGSEPMLVLSGPRTRLLG 292


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 413 SCPVGRFAQTARNGRSPWFQAQGPPSQLAG 324
           +CP   +   A+ G  P     GP ++L G
Sbjct: 263 ACPTPEYRWYAQTGSEPMLVLSGPRTRLLG 292


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 69  FFLHDQILESVYL 107
           FFLH Q+L   YL
Sbjct: 259 FFLHKQVLNRYYL 271


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 69  FFLHDQILESVYL 107
           FFLH Q+L   YL
Sbjct: 259 FFLHKQVLNRYYL 271


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 222 TXTALTPRVLTAATPTCSLNASMST 296
           T T  T    T  TP  + NAS +T
Sbjct: 664 TTTTTTTTTTTTTTPNTTQNASATT 688


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 355 RLKVHHHSSRDVLAP*XFVIVDIDAFKLQVGVAAVSTRGVXAVXV 221
           ++++ H   RD++        +++  K  VG   V T+G  AV V
Sbjct: 108 QIRMKHGLIRDLIVDRDVPTWEVNILKSIVGQLQVDTQGENAVKV 152


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/50 (22%), Positives = 20/50 (40%)
 Frame = -3

Query: 496 QYRINQFSPLXVMSFRPVIPRPRLSEXEVVRSEDLPKRPGTDGVHGSRLK 347
           Q+     SP+   S+ P  P  ++   E+ +   L     +DG    + K
Sbjct: 127 QHNNGYASPMSTSSYDPYSPNSKIGRDELSQPGSLNGYGSSDGCDARKKK 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,076
Number of Sequences: 438
Number of extensions: 2842
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)