Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f23
         (393 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6R797 Cluster: ORF118; n=1; Ostreid herpesvirus 1|Rep:...    31   6.0  
UniRef50_Q10P30 Cluster: Expressed protein; n=3; Oryza sativa|Re...    31   6.0  
UniRef50_A5PEY3 Cluster: DNA-directed RNA polymerase; n=4; Caeno...    31   7.9  

>UniRef50_Q6R797 Cluster: ORF118; n=1; Ostreid herpesvirus 1|Rep:
           ORF118 - Ostreid herpesvirus 1
          Length = 222

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 233 DYRNQYGGQEEKAPHPPIVG 174
           +Y + YGG+E++ P PP++G
Sbjct: 133 EYAHTYGGEEQRTPSPPVLG 152


>UniRef50_Q10P30 Cluster: Expressed protein; n=3; Oryza sativa|Rep:
           Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 445

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +2

Query: 47  ESFLARSFHLNFSVKS*WQCTTEDMSEAPKAAVTACIHSNLATQQWEDVALFPLVHHIDS 226
           ESFL R+FH +F + +     T D +   +A + A  + ++A   WE+V L    H+ + 
Sbjct: 226 ESFLNRAFHADFELDTEGDVHTADPAGRCEANLAA--YHSIAALTWEEVLLHGTKHYSEG 283

Query: 227 CNQ 235
            ++
Sbjct: 284 LSR 286


>UniRef50_A5PEY3 Cluster: DNA-directed RNA polymerase; n=4;
           Caenorhabditis|Rep: DNA-directed RNA polymerase -
           Caenorhabditis elegans
          Length = 1156

 Score = 31.1 bits (67), Expect = 7.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 122 SEAPKAAVTACIHSNLATQQWEDVALFPL---VHHIDSCN 232
           S+ P   + AC+    AT+   DVALFP    +H   SCN
Sbjct: 799 SDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDGSCN 838


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,419,925
Number of Sequences: 1657284
Number of extensions: 5671303
Number of successful extensions: 13902
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13897
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16080341554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)