Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f18
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    44   2e-05
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    27   2.4  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    27   2.4  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    26   4.2  

>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/55 (34%), Positives = 36/55 (65%)
 Frame = +1

Query: 121 LAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLP 285
           LA TT+R+ +G   L  +L +R++++  +  ++++A E WG+   R EI+D+R P
Sbjct: 144 LAQTTMRSEIGRLTLDHVLRERQSLNIHITDAINKAAESWGIRCLRHEIRDIRPP 198


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 436 RYLQSLSSISAEKNSTIIFPFPMDFLKAFLGGA 534
           R++  L +IS +KN   I+  P     A+LGG+
Sbjct: 317 RFISELRAISGKKNQVKIYASPERMHNAWLGGS 349


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +3

Query: 426 LTAALPAVFELYISREEFHDNLSI----PYGFLESIFGRSRTKY 545
           L AA     E  +S  EF D+  I     YGFL  ++G SRT Y
Sbjct: 103 LIAAKSFTTERKLSAAEFLDSREIHNPFTYGFLGILYGTSRTPY 146


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 255 FYFDTPRLRGLIQASLHHVTDCFPVREE 172
           F FD P++ G  + +LH  T  FP+  E
Sbjct: 269 FTFDVPQVSGSCELNLHLDTSGFPITVE 296


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 255 FYFDTPRLRGLIQASLHHVTDCFPVREE 172
           F FD P++ G  + +LH  T  FP+  E
Sbjct: 269 FTFDVPQVSGSCELNLHLDTSGFPITVE 296


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -1

Query: 536 PAPPKNAFKKSIGNGKIIVEFFSADIELKDCR*RSCKAIGLSIMTS-DASFNAFDALISP 360
           P P     K   GNGK IV  FS D  ++  R      +     TS   +F+ ++AL  P
Sbjct: 341 PLPSSAIVKFDFGNGKSIVHEFSKDDNIETLRAFVASHLSPEESTSFQLTFSNYEAL--P 398

Query: 359 SAAMI 345
           +  +I
Sbjct: 399 TTGLI 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,452
Number of Sequences: 5004
Number of extensions: 45293
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)