Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f18
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0384 + 3414291-3414508,3414509-3414755,3415864-3416013,341...    43   3e-04
03_01_0646 + 4742398-4742994,4743681-4744085                           30   1.4  
06_01_0292 + 2136637-2137050,2137162-2137671                           30   1.9  
01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251           29   3.3  

>08_01_0384 +
           3414291-3414508,3414509-3414755,3415864-3416013,
           3416419-3416476,3416556-3416648,3416775-3416807,
           3417357-3417448,3417544-3417603,3417729-3417995
          Length = 405

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 33/55 (60%)
 Frame = +1

Query: 121 LAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLP 285
           LA TT+R+ LG   L +   +R+ ++  +  S++EA   WG++  R EI+D+  P
Sbjct: 176 LAQTTMRSELGKITLDKTFEERDTLNEQIVRSINEAATDWGLKCLRYEIRDISPP 230



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +3

Query: 21  QNVLTRDSVTVAVDAVVYYRIKEP 92
           Q+ +T+D+V++ +D V+Y +I +P
Sbjct: 136 QSAITKDNVSIQIDGVLYVKIVDP 159


>03_01_0646 + 4742398-4742994,4743681-4744085
          Length = 333

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 278 DCPCSYRRPWQQKLRRIVKQER 343
           +C  SYRR W + LRR+V++ R
Sbjct: 295 NCDDSYRRAWSRLLRRLVRESR 316


>06_01_0292 + 2136637-2137050,2137162-2137671
          Length = 307

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 170 NSSLTGKQSVT*CKLAWMRPRSLGV---SK*KELKLKTSDCPCSYRRPWQQKLRRIVKQE 340
           +S+L  KQ V       +RPR + V   ++    KLK ++  C Y + W ++L    K+ 
Sbjct: 133 HSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRL 192

Query: 341 RKSL 352
            K L
Sbjct: 193 EKEL 196


>01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251
          Length = 349

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 451 LSSISAEKNSTIIFP-FPMDFLKAFLGGAGPSTTHQPSVQMTQSLPI 588
           + S+S        FP F  ++  +  GG G ++ HQPS Q+ +  PI
Sbjct: 128 MPSVSGGMRGDPRFPGFGNEYFSSRFGGEGSTSMHQPSHQLAKPPPI 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,076,492
Number of Sequences: 37544
Number of extensions: 303461
Number of successful extensions: 718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)