Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2f18
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory ... 171 5e-43
U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein. 171 5e-43
U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein. 171 5e-43
U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory ... 167 8e-42
U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory ... 167 8e-42
Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical p... 144 4e-35
AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical ... 144 4e-35
AL032659-1|CAA21750.1| 298|Caenorhabditis elegans Hypothetical ... 139 1e-33
U55375-2|AAC69044.2| 285|Caenorhabditis elegans Uncoordinated p... 130 7e-31
EF538426-1|ABQ08183.1| 289|Caenorhabditis elegans stomatin-like... 130 7e-31
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 129 2e-30
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 128 5e-30
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 123 1e-28
U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protei... 118 4e-27
Z66564-4|CAA91476.1| 267|Caenorhabditis elegans Hypothetical pr... 105 2e-23
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 89 3e-18
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 49 3e-06
AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin prot... 44 1e-04
U42013-1|AAB06496.1| 415|Caenorhabditis elegans UNC-24 protein. 35 0.060
AF045644-5|AAC02604.1| 415|Caenorhabditis elegans Uncoordinated... 35 0.060
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 32 0.42
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 32 0.42
AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical ... 28 5.2
AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical ... 28 5.2
AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical ... 28 5.2
AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical ... 28 5.2
AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical ... 28 5.2
AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical ... 28 5.2
AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic AMP-re... 28 5.2
AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic AMP-re... 28 5.2
Z49937-2|CAE17790.1| 89|Caenorhabditis elegans Hypothetical pr... 27 9.1
AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical... 27 9.1
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 27 9.1
>U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform a protein.
Length = 481
Score = 171 bits (415), Expect = 5e-43
Identities = 88/152 (57%), Positives = 104/152 (68%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLRN+LG + LA++LSDREAISH MQ +LDEATEPWGV+VERVE+KDVRLPV
Sbjct: 229 STKLLAQTTLRNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVKDVRLPV 288
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QLQ LKEA+ V+ ++P ALQLRYLQ+L+SISA
Sbjct: 289 QLQRAMAAEAEAAREARAKVIVAEGEQKASRALKEAAEVIAESPSALQLRYLQTLNSISA 348
Query: 469 EKNSTIIFPFPMDFLKAFLGGAGPSTTHQPSV 564
EKNSTIIFPFP+D L AFL P PS+
Sbjct: 349 EKNSTIIFPFPIDLLSAFLQRTPPKVEEPPSL 380
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRI 83
Q +L++DSVTVAVDAVVY+RI
Sbjct: 193 QEILSKDSVTVAVDAVVYFRI 213
>U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 171 bits (415), Expect = 5e-43
Identities = 88/152 (57%), Positives = 104/152 (68%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLRN+LG + LA++LSDREAISH MQ +LDEATEPWGV+VERVE+KDVRLPV
Sbjct: 229 STKLLAQTTLRNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVKDVRLPV 288
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QLQ LKEA+ V+ ++P ALQLRYLQ+L+SISA
Sbjct: 289 QLQRAMAAEAEAAREARAKVIVAEGEQKASRALKEAAEVIAESPSALQLRYLQTLNSISA 348
Query: 469 EKNSTIIFPFPMDFLKAFLGGAGPSTTHQPSV 564
EKNSTIIFPFP+D L AFL P PS+
Sbjct: 349 EKNSTIIFPFPIDLLSAFLQRTPPKVEEPPSL 380
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRI 83
Q +L++DSVTVAVDAVVY+RI
Sbjct: 193 QEILSKDSVTVAVDAVVYFRI 213
>U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 171 bits (415), Expect = 5e-43
Identities = 88/152 (57%), Positives = 104/152 (68%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLRN+LG + LA++LSDREAISH MQ +LDEATEPWGV+VERVE+KDVRLPV
Sbjct: 229 STKLLAQTTLRNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVKDVRLPV 288
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QLQ LKEA+ V+ ++P ALQLRYLQ+L+SISA
Sbjct: 289 QLQRAMAAEAEAAREARAKVIVAEGEQKASRALKEAAEVIAESPSALQLRYLQTLNSISA 348
Query: 469 EKNSTIIFPFPMDFLKAFLGGAGPSTTHQPSV 564
EKNSTIIFPFP+D L AFL P PS+
Sbjct: 349 EKNSTIIFPFPIDLLSAFLQRTPPKVEEPPSL 380
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRI 83
Q +L++DSVTVAVDAVVY+RI
Sbjct: 193 QEILSKDSVTVAVDAVVYFRI 213
>U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform c protein.
Length = 317
Score = 167 bits (405), Expect = 8e-42
Identities = 86/144 (59%), Positives = 101/144 (70%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLRN+LG + LA++LSDREAISH MQ +LDEATEPWGV+VERVE+KDVRLPV
Sbjct: 154 STKLLAQTTLRNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVKDVRLPV 213
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QLQ LKEA+ V+ ++P ALQLRYLQ+L+SISA
Sbjct: 214 QLQRAMAAEAEAAREARAKVIVAEGEQKASRALKEAAEVIAESPSALQLRYLQTLNSISA 273
Query: 469 EKNSTIIFPFPMDFLKAFLGGAGP 540
EKNSTIIFPFP+D L AFL P
Sbjct: 274 EKNSTIIFPFPIDLLSAFLQRTPP 297
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRI 83
Q +L++DSVTVAVDAVVY+RI
Sbjct: 118 QEILSKDSVTVAVDAVVYFRI 138
>U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform b protein.
Length = 392
Score = 167 bits (405), Expect = 8e-42
Identities = 86/144 (59%), Positives = 101/144 (70%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLRN+LG + LA++LSDREAISH MQ +LDEATEPWGV+VERVE+KDVRLPV
Sbjct: 229 STKLLAQTTLRNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVKDVRLPV 288
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QLQ LKEA+ V+ ++P ALQLRYLQ+L+SISA
Sbjct: 289 QLQRAMAAEAEAAREARAKVIVAEGEQKASRALKEAAEVIAESPSALQLRYLQTLNSISA 348
Query: 469 EKNSTIIFPFPMDFLKAFLGGAGP 540
EKNSTIIFPFP+D L AFL P
Sbjct: 349 EKNSTIIFPFPIDLLSAFLQRTPP 372
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRI 83
Q +L++DSVTVAVDAVVY+RI
Sbjct: 193 QEILSKDSVTVAVDAVVYFRI 213
>Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 144 bits (350), Expect = 4e-35
Identities = 75/142 (52%), Positives = 95/142 (66%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLRN LG R LA++LS R+AIS MQA+LDEAT+PWGV+VERVEIKDVRLP+
Sbjct: 138 STKLLAQTTLRNFLGTRTLAEMLSSRDAISMQMQAALDEATDPWGVKVERVEIKDVRLPI 197
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QLQ L +A+ V+ +P A+QLRYLQ+L+SIS+
Sbjct: 198 QLQRAMAAEAEAARAAGAKIIAAEGEQLASRALADAADVIATSPCAIQLRYLQTLNSISS 257
Query: 469 EKNSTIIFPFPMDFLKAFLGGA 534
EKN+TIIFPFP + + F+ A
Sbjct: 258 EKNNTIIFPFPTELIAKFIQSA 279
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/21 (66%), Positives = 20/21 (95%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRI 83
Q +L++DSVTV+VDAV+Y+RI
Sbjct: 102 QEILSKDSVTVSVDAVIYFRI 122
>AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 144 bits (350), Expect = 4e-35
Identities = 75/142 (52%), Positives = 95/142 (66%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLRN LG R LA++LS R+AIS MQA+LDEAT+PWGV+VERVEIKDVRLP+
Sbjct: 138 STKLLAQTTLRNFLGTRTLAEMLSSRDAISMQMQAALDEATDPWGVKVERVEIKDVRLPI 197
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QLQ L +A+ V+ +P A+QLRYLQ+L+SIS+
Sbjct: 198 QLQRAMAAEAEAARAAGAKIIAAEGEQLASRALADAADVIATSPCAIQLRYLQTLNSISS 257
Query: 469 EKNSTIIFPFPMDFLKAFLGGA 534
EKN+TIIFPFP + + F+ A
Sbjct: 258 EKNNTIIFPFPTELIAKFIQSA 279
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/21 (66%), Positives = 20/21 (95%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRI 83
Q +L++DSVTV+VDAV+Y+RI
Sbjct: 102 QEILSKDSVTVSVDAVIYFRI 122
>AL032659-1|CAA21750.1| 298|Caenorhabditis elegans Hypothetical
protein Y71H9A.2 protein.
Length = 298
Score = 139 bits (337), Expect = 1e-33
Identities = 72/143 (50%), Positives = 93/143 (65%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLRN+LG + L ++LSDR+ IS MQA+LDE T PWGV+VERVE+KDVRLP
Sbjct: 143 STKLLAQTTLRNILGTKTLTEMLSDRDVISLQMQATLDETTIPWGVKVERVEMKDVRLPY 202
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QLQ L EA+ V+ +P A+QLRYLQ+L+SIS+
Sbjct: 203 QLQRVMAAEAEATRDAMAKIIAAEGEKNASTALAEAADVISMSPCAIQLRYLQTLNSISS 262
Query: 469 EKNSTIIFPFPMDFLKAFLGGAG 537
EKN+TI+FPFPM+ + F+ G
Sbjct: 263 EKNNTIVFPFPMEMMSRFIKRQG 285
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/21 (66%), Positives = 20/21 (95%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRI 83
Q +L++D+VTVAVDAVV++RI
Sbjct: 107 QELLSKDAVTVAVDAVVFFRI 127
>U55375-2|AAC69044.2| 285|Caenorhabditis elegans Uncoordinated
protein 1 protein.
Length = 285
Score = 130 bits (315), Expect = 7e-31
Identities = 67/139 (48%), Positives = 90/139 (64%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLRN LGM+ L ++L++REAI+ + + LDE TE WGV+VERVE+KD+RLP
Sbjct: 143 STKLLAQTTLRNALGMKTLTEMLTEREAIAQLCETILDEGTEHWGVKVERVEVKDIRLPQ 202
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QL LKEA+ V+ NP+ALQLR+LQ+L+SI+A
Sbjct: 203 QLTRAMAAEAEAAREARAKVVAAEGEQKASRALKEAADVIQANPVALQLRHLQALNSIAA 262
Query: 469 EKNSTIIFPFPMDFLKAFL 525
E NSTI+FP P++ AF+
Sbjct: 263 EHNSTIVFPVPVEMFGAFM 281
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/28 (57%), Positives = 24/28 (85%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRIKEPLNAV 104
Q +L++DSVTV+VDAVVY+R +P+ +V
Sbjct: 107 QEILSKDSVTVSVDAVVYFRTSDPIASV 134
>EF538426-1|ABQ08183.1| 289|Caenorhabditis elegans stomatin-like
protein UNC-1 protein.
Length = 289
Score = 130 bits (315), Expect = 7e-31
Identities = 67/139 (48%), Positives = 90/139 (64%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLRN LGM+ L ++L++REAI+ + + LDE TE WGV+VERVE+KD+RLP
Sbjct: 147 STKLLAQTTLRNALGMKTLTEMLTEREAIAQLCETILDEGTEHWGVKVERVEVKDIRLPQ 206
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QL LKEA+ V+ NP+ALQLR+LQ+L+SI+A
Sbjct: 207 QLTRAMAAEAEAAREARAKVVAAEGEQKASRALKEAADVIQANPVALQLRHLQALNSIAA 266
Query: 469 EKNSTIIFPFPMDFLKAFL 525
E NSTI+FP P++ AF+
Sbjct: 267 EHNSTIVFPVPVEMFGAFM 285
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/28 (57%), Positives = 24/28 (85%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRIKEPLNAV 104
Q +L++DSVTV+VDAVVY+R +P+ +V
Sbjct: 111 QEILSKDSVTVSVDAVVYFRTSDPIASV 138
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 129 bits (311), Expect = 2e-30
Identities = 70/155 (45%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLR +LG L+++LSDRE IS M+ SLDEATEPWG++VERVE++DVRLP
Sbjct: 151 STKLLAQTTLRTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELRDVRLPS 210
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
Q+Q L EA+ ++ + A+QLRYL +L++IS+
Sbjct: 211 QMQRAMAAEAEATRDAGAKIIAAEGELRASAALAEAATIISKSEGAMQLRYLHTLNAISS 270
Query: 469 EKNSTIIFPFPMDFLKAFLG-GAGPSTTHQPSVQM 570
EK STIIFPFPM+ L G+G ++ + P +M
Sbjct: 271 EKTSTIIFPFPMEILGGISKVGSGGTSQNFPVQEM 305
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/28 (57%), Positives = 25/28 (89%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRIKEPLNAV 104
Q +L+RDSVTV+VDAVVY+++ +P+ +V
Sbjct: 115 QEILSRDSVTVSVDAVVYFKVFDPITSV 142
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 128 bits (308), Expect = 5e-30
Identities = 66/135 (48%), Positives = 87/135 (64%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
ST+LLA TTLR +LG L+++LSDRE IS M+ SLDEATEPWG++VERVE++DVRLP
Sbjct: 151 STKLLAQTTLRTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELRDVRLPS 210
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
Q+Q L EA+ ++ + A+QLRYL +L++IS+
Sbjct: 211 QMQRAMAAEAEATRDAGAKIIAAEGELRASAALAEAATIISKSEGAMQLRYLHTLNAISS 270
Query: 469 EKNSTIIFPFPMDFL 513
EK STIIFPFPM+ L
Sbjct: 271 EKTSTIIFPFPMEIL 285
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/28 (57%), Positives = 25/28 (89%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRIKEPLNAV 104
Q +L+RDSVTV+VDAVVY+++ +P+ +V
Sbjct: 115 QEILSRDSVTVSVDAVVYFKVFDPITSV 142
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 123 bits (296), Expect = 1e-28
Identities = 61/139 (43%), Positives = 88/139 (63%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
STRLLA TTLRNVLG + L+++LS+R+AI+ + + LDE T+PWGV+VERVEIKD+RLP
Sbjct: 222 STRLLAQTTLRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDIRLPH 281
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QL L+ A+ + N M +QLRYLQ+L+ ISA
Sbjct: 282 QLMRSMAAKAEAVRRARAAIIAAQGEKDASESLQTAADTIAQNKMTIQLRYLQTLTKISA 341
Query: 469 EKNSTIIFPFPMDFLKAFL 525
++N+TI+ P+P++ K ++
Sbjct: 342 QRNNTIVMPYPIEVAKHYM 360
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/28 (53%), Positives = 24/28 (85%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRIKEPLNAV 104
Q +L+RDSVTV+V+AV+Y+R+ P+ +V
Sbjct: 186 QEILSRDSVTVSVEAVIYFRVSNPVISV 213
>U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protein 2
protein.
Length = 314
Score = 118 bits (284), Expect = 4e-27
Identities = 61/122 (50%), Positives = 79/122 (64%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
STRLLA TTLRN+LG R L+++LSDRE ++ MQ LDEATE WG++VERVEIKDVRLP+
Sbjct: 181 STRLLAQTTLRNMLGTRSLSEILSDRETLAASMQTILDEATESWGIKVERVEIKDVRLPI 240
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
QLQ L++A+ V+ +P ALQLRYLQ+L+S++
Sbjct: 241 QLQRAMAAEAEATREARAKVIAAEGEQKASRALRDAASVIAQSPAALQLRYLQTLNSVAR 300
Query: 469 EK 474
EK
Sbjct: 301 EK 302
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRI 83
Q +LT+DSVT +VDAV+YYRI
Sbjct: 145 QEILTKDSVTTSVDAVIYYRI 165
>Z66564-4|CAA91476.1| 267|Caenorhabditis elegans Hypothetical
protein F52D10.5 protein.
Length = 267
Score = 105 bits (253), Expect = 2e-23
Identities = 57/136 (41%), Positives = 79/136 (58%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
STR LA ++LRNVLG R LA+L++DR I+ ++ LD AT WG+ VERVEIKD+RLP
Sbjct: 127 STRQLAQSSLRNVLGTRSLAELMTDRHGIAVQVKYILDSATLFWGIHVERVEIKDIRLPR 186
Query: 289 QLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKEASLVMIDNPMALQLRYLQSLSSISA 468
++ ++A+ + +P ALQLRYLQ+L ISA
Sbjct: 187 EMCRAMAAEAEAQRESDAKVVTAQGELDASMAFQKAADELAGSPTALQLRYLQTLVKISA 246
Query: 469 EKNSTIIFPFPMDFLK 516
N TI+ PFPM+++K
Sbjct: 247 HDNHTIVVPFPMEYIK 262
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRIKEPL-NAVRVN 113
Q +LTRDSVT+ VDA VYYR +P+ + RVN
Sbjct: 91 QEMLTRDSVTIGVDAAVYYRTSDPIASLARVN 122
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/62 (66%), Positives = 53/62 (85%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPV 288
STRLLA TTLRNVLG + L+++LS+R+AI+ + + LDE T+PWGV+VERVEIKD+RLP
Sbjct: 222 STRLLAQTTLRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDIRLPH 281
Query: 289 QL 294
QL
Sbjct: 282 QL 283
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/28 (53%), Positives = 24/28 (85%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRIKEPLNAV 104
Q +L+RDSVTV+V+AV+Y+R+ P+ +V
Sbjct: 186 QEILSRDSVTVSVEAVIYFRVSNPVISV 213
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/59 (32%), Positives = 41/59 (69%)
Frame = +1
Query: 121 LAATTLRNVLGMRDLAQLLSDREAISHMMQASLDEATEPWGVEVERVEIKDVRLPVQLQ 297
LA TT+R+ +G +L + +RE ++ + ++++A+ PWG++ R EI+D+++P ++Q
Sbjct: 132 LAQTTMRSEVGKINLDTVFKERELLNENIVFAINKASAPWGIQCMRYEIRDMQMPSKIQ 190
>AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin protein
5, isoform c protein.
Length = 175
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/30 (66%), Positives = 27/30 (90%)
Frame = +1
Query: 109 STRLLAATTLRNVLGMRDLAQLLSDREAIS 198
STRLLA TTLRNVLG + L+++LS+R+AI+
Sbjct: 138 STRLLAQTTLRNVLGTKTLSEMLSERDAIA 167
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/28 (53%), Positives = 24/28 (85%)
Frame = +3
Query: 21 QNVLTRDSVTVAVDAVVYYRIKEPLNAV 104
Q +L+RDSVTV+V+AV+Y+R+ P+ +V
Sbjct: 102 QEILSRDSVTVSVEAVIYFRVSNPVISV 129
>U42013-1|AAB06496.1| 415|Caenorhabditis elegans UNC-24 protein.
Length = 415
Score = 34.7 bits (76), Expect = 0.060
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 106 ASTRLLAATTLRNVLGMRDLAQLLS--DREAISHMMQASLDEATEPWGVEVERVEIKDVR 279
AS R LA T L + + + + S DR IS ++ L T +GVE+ VEI DV+
Sbjct: 173 ASVRTLANTMLYRYISKKRICDVTSSQDRRIISANLKDELGSFTCQFGVEITDVEISDVK 232
Query: 280 L 282
+
Sbjct: 233 I 233
>AF045644-5|AAC02604.1| 415|Caenorhabditis elegans Uncoordinated
protein 24 protein.
Length = 415
Score = 34.7 bits (76), Expect = 0.060
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 106 ASTRLLAATTLRNVLGMRDLAQLLS--DREAISHMMQASLDEATEPWGVEVERVEIKDVR 279
AS R LA T L + + + + S DR IS ++ L T +GVE+ VEI DV+
Sbjct: 173 ASVRTLANTMLYRYISKKRICDVTSSQDRRIISANLKDELGSFTCQFGVEITDVEISDVK 232
Query: 280 L 282
+
Sbjct: 233 I 233
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 2 AVCCFSTKCTNARFCDSGSGRCSVLPNQRTLKCS 103
A C + +C N CD SG CS P R KC+
Sbjct: 1208 AKCEETCECENGALCDPISGHCSCQPGWRGKKCN 1241
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +2
Query: 8 CCFSTKCTNARFCDSGSGRCSVLPNQRTLKC 100
C KC N CD+ +G C P KC
Sbjct: 899 CMQLCKCQNGAICDTSNGSCECAPGWSGKKC 929
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 2 AVCCFSTKCTNARFCDSGSGRCSVLPNQRTLKC 100
A C C N CDS +G C P R KC
Sbjct: 983 AGCKGICSCQNGATCDSVTGSCECRPGWRGKKC 1015
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 8 CCFSTKCTNARFCDSGSGRC 67
C S +C N++ CD SGRC
Sbjct: 1253 CSQSCRCANSKSCDHISGRC 1272
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 8 CCFSTKCTNARFCDSGSGRCSVLP 79
C C N CD +GRC LP
Sbjct: 1167 CAQRCNCKNGASCDRKTGRCECLP 1190
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 2 AVCCFSTKCTNARFCDSGSGRCSVLPNQRTLKCS 103
A C + +C N CD SG CS P R KC+
Sbjct: 1208 AKCEETCECENGALCDPISGHCSCQPGWRGKKCN 1241
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +2
Query: 8 CCFSTKCTNARFCDSGSGRCSVLPNQRTLKC 100
C KC N CD+ +G C P KC
Sbjct: 899 CMQLCKCQNGAICDTSNGSCECAPGWSGKKC 929
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 2 AVCCFSTKCTNARFCDSGSGRCSVLPNQRTLKC 100
A C C N CDS +G C P R KC
Sbjct: 983 AGCKGICSCQNGATCDSVTGSCECRPGWRGKKC 1015
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 8 CCFSTKCTNARFCDSGSGRC 67
C S +C N++ CD SGRC
Sbjct: 1253 CSQSCRCANSKSCDHISGRC 1272
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 8 CCFSTKCTNARFCDSGSGRCSVLP 79
C C N CD +GRC LP
Sbjct: 1167 CAQRCNCKNGASCDRKTGRCECLP 1190
>AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical
protein Y41C4A.4e protein.
Length = 306
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 351 CRRRRN*SIKSIEGSITCHDRQSYGLTAALPAVFELYISREE 476
CRR++ +K +E ++ + Q+ L L + ELY +E+
Sbjct: 262 CRRKKKEYVKCLENRVSVLENQNKALIEELKTLKELYCRKEK 303
>AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical
protein Y41C4A.4d protein.
Length = 331
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 351 CRRRRN*SIKSIEGSITCHDRQSYGLTAALPAVFELYISREE 476
CRR++ +K +E ++ + Q+ L L + ELY +E+
Sbjct: 287 CRRKKKEYVKCLENRVSVLENQNKALIEELKTLKELYCRKEK 328
>AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical
protein Y41C4A.4c protein.
Length = 314
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 351 CRRRRN*SIKSIEGSITCHDRQSYGLTAALPAVFELYISREE 476
CRR++ +K +E ++ + Q+ L L + ELY +E+
Sbjct: 270 CRRKKKEYVKCLENRVSVLENQNKALIEELKTLKELYCRKEK 311
>AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical
protein Y41C4A.4b protein.
Length = 327
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 351 CRRRRN*SIKSIEGSITCHDRQSYGLTAALPAVFELYISREE 476
CRR++ +K +E ++ + Q+ L L + ELY +E+
Sbjct: 283 CRRKKKEYVKCLENRVSVLENQNKALIEELKTLKELYCRKEK 324
>AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical
protein Y41C4A.4a protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 351 CRRRRN*SIKSIEGSITCHDRQSYGLTAALPAVFELYISREE 476
CRR++ +K +E ++ + Q+ L L + ELY +E+
Sbjct: 281 CRRKKKEYVKCLENRVSVLENQNKALIEELKTLKELYCRKEK 322
>AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical
protein Y32H12A.7 protein.
Length = 600
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 53 GSGRCSVLPNQRTLKCSARQQDSWPL 130
G G L RTLKC A QD W L
Sbjct: 32 GMGGAVSLTRLRTLKCEAEHQDPWLL 57
>AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 gamma 2 protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 351 CRRRRN*SIKSIEGSITCHDRQSYGLTAALPAVFELYISREE 476
CRR++ +K +E ++ + Q+ L L + ELY +E+
Sbjct: 281 CRRKKKEYVKCLENRVSVLENQNKALIEELKTLKELYCRKEK 322
>AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 beta protein.
Length = 306
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 351 CRRRRN*SIKSIEGSITCHDRQSYGLTAALPAVFELYISREE 476
CRR++ +K +E ++ + Q+ L L + ELY +E+
Sbjct: 262 CRRKKKEYVKCLENRVSVLENQNKALIEELKTLKELYCRKEK 303
>Z49937-2|CAE17790.1| 89|Caenorhabditis elegans Hypothetical
protein F14F3.4 protein.
Length = 89
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 566 CTLGWCVVLGPAPPKNAFKKSIGNGKII 483
C G CV G APP A KS+ G I
Sbjct: 42 CYYGQCVPEGSAPPMPALDKSVAVGPCI 69
>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
protein Y75B8A.24 protein.
Length = 2121
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 421 MALQLRYLQSLSSISAEKNS---TIIFPFPMDFLKAFLGGAGPSTTHQPS 561
M L L+S+ SA+ ++ ++IFP P+D K G G H+ S
Sbjct: 181 MCYALGLLRSIGRFSADYDTPLISLIFPLPVDETKKCKGAGGADIKHRIS 230
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 5 VCCFSTKCTNARFCDSGSGRC 67
VC F+T C FC G RC
Sbjct: 117 VCSFNTDCLGGMFCAIGQCRC 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,792
Number of Sequences: 27780
Number of extensions: 257292
Number of successful extensions: 802
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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