Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2f16
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 30 2.0
06_01_0867 - 6600847-6601413,6601954-6602181 30 2.0
05_05_0133 + 22614219-22614651,22614767-22615671,22615918-226162... 28 6.1
02_05_0734 + 31318380-31318610,31319422-31319988 28 6.1
01_01_0795 - 6187518-6188219 28 6.1
10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428... 28 8.0
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389... 28 8.0
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174... 28 8.0
>06_03_1318 -
29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 566 LMERLFCCFLELRQNLCETYSINNKISLHTQKLCYHN 676
L E L CCFL++R+ E +N + K CY N
Sbjct: 874 LTEELICCFLDMRRQYLE---LNGLSYCYAMKGCYQN 907
>06_01_0867 - 6600847-6601413,6601954-6602181
Length = 264
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +2
Query: 392 LFQYQHLKEKYLTVNYQ*KWILSNTKERLMVKALQPMLLFLLHGMSQCTHIQIFQIILLM 571
L+++ H K L V Y + ++ E L++ + L FL+ GM+ T I F +
Sbjct: 122 LYKHVHSKHHTLVVPYAFGALYNHPLEGLILDTIGGALSFLIAGMTPKTAIFFFSFATIK 181
Query: 572 ERLFCCFLELRQNLCETYSINN 637
C L L N+ + NN
Sbjct: 182 TVDDHCGLWLPGNILHVFFSNN 203
>05_05_0133 +
22614219-22614651,22614767-22615671,22615918-22616224,
22616307-22616380
Length = 572
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 247 PKNRIAKACDDRPFEGLIITNTEPLSSLSSRSACPRC 357
PK R K C +P L +T P+SSL++ C
Sbjct: 385 PKRRRIKTCVKKPQNDLELTEENPISSLNNECTFVDC 421
>02_05_0734 + 31318380-31318610,31319422-31319988
Length = 265
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +2
Query: 395 FQYQHLKEKY--LTVNYQ*KWILSNTKERLMVKALQPMLLFLLHGMSQCTHIQIFQIILL 568
F Y+H+ K+ L V Y + ++ E L++ + L FL+ GM+ T I F +
Sbjct: 122 FLYKHIHSKHHTLVVPYSFGALYNHPLEGLILDTIGGALSFLVSGMTPRTSIFFFSFATI 181
Query: 569 MERLFCCFLELRQNLCETYSINN 637
C L L N+ NN
Sbjct: 182 KTVDDHCGLWLPGNILHALFNNN 204
>01_01_0795 - 6187518-6188219
Length = 233
Score = 28.3 bits (60), Expect = 6.1
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = +1
Query: 328 LSSRSACPRC-GKS----RMYFCYVCFIPV-PALEGKIPYCKLPIKVDIIKHKGEINGKS 489
LSSR++CP C GK+ + V I V P L G P + + V + KGE+ G S
Sbjct: 149 LSSRASCPVCRGKAAPADELADAIVARIAVTPDLVG--PRVSMSVVVPVEMLKGEMVGAS 206
Query: 490 TAAHAAVLAPRDV 528
+ + AA P +
Sbjct: 207 STSRAASAPPEQL 219
>10_07_0177 -
13841148-13841267,13841569-13841645,13842710-13842860,
13842942-13843056,13843145-13843236,13843317-13843370,
13843849-13843935,13844023-13844109,13844191-13844274,
13844359-13844445,13844793-13845549,13846491-13846648
Length = 622
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 308 TLNRLVLYLVEVLAHVAASQECTFVMFALFQYQHLKEKYLT---VNYQ*KWILSNTKER 475
T RL+ +VL+H+ + +F F++ Y L + Y T +Y W LS T R
Sbjct: 228 TPRRLIQVNGDVLSHLDLDSQTSFGTFSVLSYNILADAYATSDAYSYCPTWALSWTYRR 286
>09_04_0237 -
15936630-15937250,15937457-15937534,15938874-15938973,
15940414-15942278
Length = 887
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 361 KSRMYFCYVCFIPVPA-LEGKIP-YCKLPIKVDIIKHKGEINGKSTAAHAAVLA 516
+ RM FCY+C + + A LEGK C + V +IK + + TA++ + A
Sbjct: 622 RCRMVFCYLCGLQIGAVLEGKEKCQCLDNLGVVLIKALCRFSKRRTASYPPIKA 675
>06_01_1173 +
10014391-10014678,10015478-10017245,10017333-10017436,
10017632-10017706,10017887-10017918,10019396-10019482,
10020848-10021294,10021477-10021630,10022203-10022329,
10022547-10022632,10022719-10022790,10023083-10023286,
10023732-10024049
Length = 1253
Score = 27.9 bits (59), Expect = 8.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 373 YFCYVCFIPVPALEGKIPYCK 435
+FC+VC + +E + P+CK
Sbjct: 48 HFCFVCIMAWARVESRCPFCK 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,075,326
Number of Sequences: 37544
Number of extensions: 286684
Number of successful extensions: 740
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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