Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f16
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   3e-23
SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_40509| Best HMM Match : Cyclase (HMM E-Value=8.89965e-42)           29   3.6  
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)            29   4.7  
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_30341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score =  105 bits (253), Expect = 3e-23
 Identities = 47/92 (51%), Positives = 60/92 (65%)
 Frame = +1

Query: 283 PFEGLIITNTEPLSSLSSRSACPRCGKSRMYFCYVCFIPVPALEGKIPYCKLPIKVDIIK 462
           PF  L I + EPL   + R+ CP+C  SR Y+CY C+  V      +P   LPI VDI+K
Sbjct: 23  PFSDLGIASHEPLRG-AERAPCPKCQTSRKYYCYECYTTVGIERSLVPSVTLPITVDIVK 81

Query: 463 HKGEINGKSTAAHAAVLAPRDVTVYTYPDIPD 558
           H+GE+ GKSTA HAA+LAP  VT+Y YPD P+
Sbjct: 82  HRGELAGKSTATHAAILAPVQVTIYNYPDFPE 113


>SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 574 KVVLLFPGAEAKSVRDLFNQQQNQPSYSEIMLSQLP 681
           KVVLLF G + K  +    +Q+  P Y+E ML  +P
Sbjct: 633 KVVLLFDGQKVKKKKTSTRKQEKNPVYNESMLFDIP 668


>SB_40509| Best HMM Match : Cyclase (HMM E-Value=8.89965e-42)
          Length = 325

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 549 IWICVHCDIPWSKNSSMGCSAFTINLSFVFDNIHFYW*FTVRY 421
           +W  V C      +S+    +  INLS+ FDN   YW  + R+
Sbjct: 3   LWSVVTCFALVGLSSTAPAPSKWINLSYKFDNTSIYWPGSTRF 45


>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
          Length = 821

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 307 NTEPLSSLSSRSACPRCGKSRMYFCYVCFIPVPALE--GKIPYCKLPIKVDIIKHKGEIN 480
           N +P SS S ++     GKS +     C I +PAL   G  P   LP   +I  ++G+++
Sbjct: 581 NGKPYSSSSYKTKFHASGKSVLSRIVCCVIRIPALPAGGTFPQPLLP--GEIYNYRGKMD 638

Query: 481 GKS 489
            KS
Sbjct: 639 KKS 641


>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1494

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 89   KYIILYKYHIFLCLDIVLYCHV*MV--LQNKQF 181
            KY+++    +F CL I+++C+V  V  L+  QF
Sbjct: 1355 KYMVIAAVLMFFCLSIIIFCYVRAVTALKTAQF 1387


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,469,602
Number of Sequences: 59808
Number of extensions: 364504
Number of successful extensions: 832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)