Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f15
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    33   0.003
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -1

Query: 192 ICSFVTSIKMFRYSCKYPFFIMDYQGIKCTYYLMYLFSLLIFSTH*FYDLNILRL*FSSI 13
           +CS   ++ +  Y C  PF I     + CTYY  Y F +L+   + +Y   I  +    +
Sbjct: 74  LCSGYFTVHLLFY-C--PFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVHLLFL 130

Query: 12  LCI 4
           LCI
Sbjct: 131 LCI 133


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 454 STPWSSETWDSAVFNSANSEKTLTPKSSTSYGA 552
           S+P SS ++D    N     + L+P S   Y A
Sbjct: 136 SSPMSSGSYDPYSPNGKIGREDLSPSSLNGYSA 168


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,659
Number of Sequences: 336
Number of extensions: 3343
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)