Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f12
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10695| Best HMM Match : Pollen_Ole_e_I (HMM E-Value=5.2)            28   4.6  
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    28   4.6  
SB_40390| Best HMM Match : BON (HMM E-Value=0.68)                      27   8.1  
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_10695| Best HMM Match : Pollen_Ole_e_I (HMM E-Value=5.2)
          Length = 300

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 375 DAPIHMHF-DRFNLCRLLNVLLACVMYRSCEKKKTFIFNKT 256
           D P+  HF D +    L NV+L C   ++ EKK+   +++T
Sbjct: 35  DEPMSHHFFDEYYKKILKNVILNCEKKKNIEKKRALAWDRT 75


>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
 Frame = -2

Query: 393 IGDEKHDAPIH--------MHFDRFNLCRLLNVLLACVMYRSCEKKK 277
           IGDE    P+H        +H D   LC+     LAC+M +S + +K
Sbjct: 395 IGDEAGQIPVHSSIMAALVLHLDNSELCQWACQTLACIMAQSQKVQK 441


>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
          Length = 561

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 328 QTTEIKSIKMHVNWSIMLFVTNSL 399
           QT ++  +K+HV W ++LF    L
Sbjct: 424 QTIKLHFVKVHVPWEVLLFYAEEL 447


>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +1

Query: 7   LPSLQLRPVALACKKMFNIVFERSL-IFISLH*K-HIR 114
           +P +    V LAC+K + ++F R   +FIS+H K HIR
Sbjct: 145 MPIVYTPTVGLACRK-YGMIFRRPRGLFISIHDKGHIR 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,389
Number of Sequences: 59808
Number of extensions: 203801
Number of successful extensions: 297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)