Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f09
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0608 - 17954932-17955969                                         30   0.88 
06_01_0971 + 7498971-7499477,7499578-7499715,7500653-7500732,750...    30   1.2  
03_02_0353 + 7756308-7756732,7757835-7757940,7757976-7758371           29   2.7  
04_03_0600 - 17856213-17856382,17856434-17857393,17857644-178578...    28   3.5  
03_05_0927 - 28874819-28877098,28877689-28877691                       28   3.5  
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313     28   4.7  
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562...    27   6.2  
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573...    27   8.2  

>04_03_0608 - 17954932-17955969
          Length = 345

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 164 IDE*NQLISSGDPYH*TVKMAEVDPETLLEWLLTGQGDERDMQLIALEQL 313
           IDE NQ +  G P +       +DP+ LLE+ LT + D     +I LE L
Sbjct: 173 IDEENQAVPKGTPGY-------IDPDYLLEYQLTSKNDVYSFGVILLELL 215


>06_01_0971 +
           7498971-7499477,7499578-7499715,7500653-7500732,
           7501175-7501584,7503650-7503834,7504280-7504365,
           7504641-7504774,7506491-7506790,7506999-7507147,
           7507762-7507845
          Length = 690

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 8/19 (42%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -1

Query: 418 CTFIQKNLAQSWK-KCSWW 365
           C F ++N  ++WK +C+WW
Sbjct: 579 CVFFEQNTRETWKVRCTWW 597


>03_02_0353 + 7756308-7756732,7757835-7757940,7757976-7758371
          Length = 308

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 338 NVDRCFESCPPRTFLPALCKIFLDECAPDNV 430
           N+ RC  SC      P  CKI+ ++   D+V
Sbjct: 103 NIPRCISSCVEAKIDPPYCKIWCEDMCGDDV 133


>04_03_0600 -
           17856213-17856382,17856434-17857393,17857644-17857808,
           17858357-17858399
          Length = 445

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 164 IDE*NQLISSGDPYH*TVKMAEVDPETLLEWLLTGQGDERDMQLIALEQL 313
           IDE  Q++  G P +       +DP+ LLE+ LT   D     +I LE L
Sbjct: 290 IDEKTQVVPKGTPGY-------IDPDYLLEYQLTASNDVYSFGVILLELL 332


>03_05_0927 - 28874819-28877098,28877689-28877691
          Length = 760

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 329 LVEAYTAVQEQ*VAYHVHHPAQSAATPVMSLDPLLPSLQFSGMDHH 192
           L  A+ A  +   +Y+    A +  T  +  + LLP + FSG++HH
Sbjct: 346 LTHAFWADAKARTSYYYFGDAVTLETSFVENNDLLPLVMFSGVNHH 391


>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
          Length = 739

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 164 IDE*NQLISSGDPYH*TVKMAEVDPETLLEWLLTGQGDERDMQLIALEQL 313
           IDE  Q +  G P +       +DP+ LLE+ LT + D     +I LE L
Sbjct: 577 IDENTQAVPKGTPGY-------IDPDYLLEYQLTSKNDVYSFGVILLELL 619


>04_03_0616 -
           18052596-18053779,18053935-18054099,18056236-18056260,
           18057259-18057312,18057354-18057619,18058633-18059371
          Length = 810

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +2

Query: 164 IDE*NQLISSGDPYH*TVKMAEVDPETLLEWLLTGQGDERDMQLIALEQL 313
           IDE  Q +  G P +       +DPE LLE+ LT + D     +I LE L
Sbjct: 637 IDEKTQSMLKGTPGY-------IDPEYLLEYQLTAKNDVYSFGVILLELL 679


>02_03_0300 +
           17454622-17455402,17455535-17456977,17457015-17457317,
           17458429-17458519,17458623-17459757,17459998-17460077,
           17460449-17460533,17460614-17460705,17461079-17461147,
           17461227-17461263,17461351-17461433,17461695-17461840,
           17461868-17462138,17462245-17462281,17462428-17462721
          Length = 1648

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -3

Query: 317 YTAVQEQ*VAYHVHHPAQSAATPVMSLDPLLPS--LQFSGMDHHSKLIDFIHRS 162
           Y   +EQ      HHP    A     + P L      F G DHH + +D + ++
Sbjct: 98  YVRRKEQNTTPTEHHPPSKDAVAHTIVVPTLAKRCFNFDGRDHHEENVDLLSQT 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,799
Number of Sequences: 37544
Number of extensions: 242387
Number of successful extensions: 568
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)