Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f09
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)            185   2e-47
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16)                   29   2.1  
SB_44080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08)               28   4.8  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            28   4.8  
SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_6682| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)           27   8.4  
SB_7648| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.4  

>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score =  185 bits (450), Expect = 2e-47
 Identities = 83/91 (91%), Positives = 88/91 (96%)
 Frame = +2

Query: 221 MAEVDPETLLEWLLTGQGDERDMQLIALEQLCMLLLMSDNVDRCFESCPPRTFLPALCKI 400
           M +VDP+TLLEWL  GQGDERDMQLIALEQLCMLLLMSDN+DRCFESCPPRTFLPALC+I
Sbjct: 1   MVDVDPDTLLEWLNMGQGDERDMQLIALEQLCMLLLMSDNIDRCFESCPPRTFLPALCRI 60

Query: 401 FLDECAPDNVLEVTARAITYYLDVSAECTRR 493
           FLDECAP+NVLEVTARAITYYLDVSAECTRR
Sbjct: 61  FLDECAPENVLEVTARAITYYLDVSAECTRR 91


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 74   KICVNFCCVVIIYSLKNI-FFI*GAAVVTRKIDE*NQLISSGDP 202
            KIC+N  C + + +  NI   + GA++V  K D  +++I SGDP
Sbjct: 2730 KICLNLLCCLNLSNSNNIGVLLTGASMVNTKSDT-DEVIVSGDP 2772


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 299  ALEQLCMLLLMSDNVDRCFESCPPRTFLPALCKIFLDECA 418
            +LEQ C       N+D  +    PR F   LC++ +DECA
Sbjct: 2832 SLEQPCFNGGTCSNLDGSYSCECPRGFAGRLCELDVDECA 2871


>SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16)
          Length = 605

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/74 (25%), Positives = 29/74 (39%)
 Frame = -3

Query: 416 HIHPKKSCTKLEEMFLVDSFQNTCQHYQTLVEAYTAVQEQ*VAYHVHHPAQSAATPVMSL 237
           H H K  C    E+   DS+      + T V     ++ Q  A  V  P+     P++S+
Sbjct: 514 HKHTKNGCYN-SELIQTDSYHGYDVKFDTPVMLKAEIEYQLSALIVGPPSCYGRDPLISI 572

Query: 236 DPLLPSLQFSGMDH 195
           D      +F   DH
Sbjct: 573 DKGFVRFEFKAPDH 586


>SB_44080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 118 KTVNYYYAAKINTDFNSLQFFVTKPSNCS 32
           K +NY+YAA +  +F +    +T PS+ S
Sbjct: 48  KLLNYFYAADLPEEFATANISITPPSSLS 76


>SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -1

Query: 238 WIHFCHLYSLVVW-ITTRN*LILFIDLSRN---YRCTLDEKYVFKTVNYYYAAKIN 83
           +IHFC  Y LV + +T +  L   + LSR+   YR  ++   + K VN    A ++
Sbjct: 340 YIHFCSYYQLVPFPVTKQTYLAYHVFLSRSLSCYRSVINYVNILKHVNNSLGADLS 395


>SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08)
          Length = 556

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 287 YHVHHPAQSAATPVMSLDPLLPSLQFSGMDHHSKLIDFIHRSF 159
           Y +HH  QS ATP  +   + PS +FS    H K+ D I  +F
Sbjct: 363 YTIHHQTQSRATP-KNTYRMEPSNRFS----HKKVKDIIEEAF 400


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 293 VAYHVHHPAQSAATPVMSLDPLLPSLQFSGMDHHSKLIDFIHRSFS*LPLHP 138
           + +H HHP+ S++  ++      PS   S + HH   I   H   S +  HP
Sbjct: 311 IIHHHHHPSSSSSIIIIIHHHHHPSSSSSIIHHHPSSIIIHHHPSSSIIHHP 362


>SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 401 KSCTKLEEMFLVDSFQNTCQHYQTLVEAYTAVQEQ 297
           KSCT LEE  LV S++   Q  Q+ ++ + AV E+
Sbjct: 121 KSCTALEEA-LVQSYEQNNQTIQSKLQEFFAVIER 154


>SB_6682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 401 KSCTKLEEMFLVDSFQNTCQHYQTLVEAYTAVQEQ 297
           KSCT LEE  LV S++   Q  Q+ ++ + AV E+
Sbjct: 12  KSCTALEEA-LVQSYEQNNQTIQSKLQEFFAVIER 45


>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
          Length = 725

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 284 HVHHPAQSAATPVMSLDPLLPSLQFSGMDHHSKL 183
           H+H  +   +    S+D  +P     G+ HHS L
Sbjct: 233 HIHGSSAEGSRDTESVDMYMPETYLDGVAHHSSL 266


>SB_7648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 293 LIALEQLCMLLLMSDNVDRCFESCPPRTFLPALC 394
           ++A+  LC+L  M   +D C    PP  F P  C
Sbjct: 11  VVAVTLLCVLF-MFQTIDTCGHWVPPMEFAPRYC 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,156,957
Number of Sequences: 59808
Number of extensions: 310097
Number of successful extensions: 607
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)