Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2f09
(493 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p... 174 3e-44
U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF045646-10|AAU05566.1| 548|Caenorhabditis elegans Skp1 related... 29 2.4
AF045646-9|AAL32223.1| 660|Caenorhabditis elegans Skp1 related ... 29 2.4
U97008-16|AAB52300.1| 303|Caenorhabditis elegans Serpentine rec... 27 5.6
Z81088-1|CAB03124.1| 364|Caenorhabditis elegans Hypothetical pr... 27 9.8
U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone... 27 9.8
AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear recep... 27 9.8
AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormo... 27 9.8
>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
protein C34D4.14 protein.
Length = 2761
Score = 174 bits (423), Expect = 3e-44
Identities = 78/91 (85%), Positives = 85/91 (93%)
Frame = +2
Query: 221 MAEVDPETLLEWLLTGQGDERDMQLIALEQLCMLLLMSDNVDRCFESCPPRTFLPALCKI 400
M +DPETLLEWL TG GDERD+QL+ALEQLCMLLLM+DN+DRCFESCPPRTF+PALCKI
Sbjct: 1 MDGIDPETLLEWLQTGIGDERDLQLMALEQLCMLLLMADNIDRCFESCPPRTFIPALCKI 60
Query: 401 FLDECAPDNVLEVTARAITYYLDVSAECTRR 493
F+DE APDNVLEVTARAITYYLDVS ECTRR
Sbjct: 61 FIDETAPDNVLEVTARAITYYLDVSNECTRR 91
>U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical
protein F53B1.2 protein.
Length = 483
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 167 DE*NQLISSGDPYH*TVKMAEV--DPETLLEWLLTGQGDERDMQLIALEQL 313
+E N L SG+ + T + AE+ D ETLL+ L +QLI+ E++
Sbjct: 114 NEQNHLSISGEDVYTTTRRAEIVEDEETLLDTLAKSSDGTSTVQLISREEI 164
>AF045646-10|AAU05566.1| 548|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 18, isoform
b protein.
Length = 548
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 284 DMQLIALEQLCMLLLMSDNVDRCFESCPPRTFLPALCKIFL---DECAPDNVLEVTARAI 454
D++++ L L LLL S+ F P F + ++FL + A D + E R +
Sbjct: 417 DVEIVRLSLLWTLLLFSERKSAFFAFAEPNEFYVHIAEVFLIGAEILADDVIAECAHRIL 476
Query: 455 TYYLDVSAE 481
Y+ +A+
Sbjct: 477 NGYILAAAK 485
>AF045646-9|AAL32223.1| 660|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 18, isoform
a protein.
Length = 660
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 284 DMQLIALEQLCMLLLMSDNVDRCFESCPPRTFLPALCKIFL---DECAPDNVLEVTARAI 454
D++++ L L LLL S+ F P F + ++FL + A D + E R +
Sbjct: 417 DVEIVRLSLLWTLLLFSERKSAFFAFAEPNEFYVHIAEVFLIGAEILADDVIAECAHRIL 476
Query: 455 TYYLDVSAE 481
Y+ +A+
Sbjct: 477 NGYILAAAK 485
>U97008-16|AAB52300.1| 303|Caenorhabditis elegans Serpentine
receptor, class sx protein24 protein.
Length = 303
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 226 CHLYSL--VVWITTRN*LILFIDLSRNYRCTLDEKYVFKTVNYYY 98
C L S+ + + ++ L LFI + R Y KY ++NYYY
Sbjct: 79 CFLISIYGIFAMNMQSLLALFIGIDRVYVIVYPGKYAKLSINYYY 123
>Z81088-1|CAB03124.1| 364|Caenorhabditis elegans Hypothetical
protein F53F1.1 protein.
Length = 364
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 409 IQKNLAQSWKKCSWWTAFKTP 347
I KNL W+K S+ T FK+P
Sbjct: 326 ISKNLVNIWQKNSFLTFFKSP 346
>U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone
receptor-like proteinprotein.
Length = 579
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = -1
Query: 166 DLSRNYRCTLDEKYVFKTVNYYYAAKINTDFNSLQFFVTKPSNCSINRK 20
+L +Y + + Y T + + ++ F + F V +PS+C++N +
Sbjct: 359 NLPADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNER 407
>AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear receptor
NHR-47 protein.
Length = 579
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = -1
Query: 166 DLSRNYRCTLDEKYVFKTVNYYYAAKINTDFNSLQFFVTKPSNCSINRK 20
+L +Y + + Y T + + ++ F + F V +PS+C++N +
Sbjct: 359 NLPADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNER 407
>AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 47 protein.
Length = 579
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = -1
Query: 166 DLSRNYRCTLDEKYVFKTVNYYYAAKINTDFNSLQFFVTKPSNCSINRK 20
+L +Y + + Y T + + ++ F + F V +PS+C++N +
Sbjct: 359 NLPADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNER 407
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,472,719
Number of Sequences: 27780
Number of extensions: 236006
Number of successful extensions: 659
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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