Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f06
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   3.8  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   5.0  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   6.7  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   6.7  

>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 279 KSEKKISLAYHLYMYLIDEKLMYDCEYCYNRDIETLYVVARRNKNDKLN 425
           KSE++ +L   L  Y +  K+  D E  Y R +E L +  R  + + LN
Sbjct: 33  KSEREGNLGESLNKYRLAHKVHEDVESIYRR-LERLQLCKRNEEEEMLN 80


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 600 EKQNKREEKRSFINNELKKKRNEILNEALNGVV 698
           EK+N R EKR      LK ++NE  N     +V
Sbjct: 527 EKRNTRREKRKSKKEFLKAQKNEASNNLKQEIV 559


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 306 KQAISSFQIYIQERTYLL 253
           K+ +SSFQIY++ + YLL
Sbjct: 404 KKHLSSFQIYLKPKDYLL 421


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +3

Query: 519 INLAFIDGDFTTVIYSFIKGIVARTNSEK----QNKREEKRSFINNELKKKRNEIL 674
           + ++F       V Y      +   NSE     Q K EE  SF+NNEL  +  E +
Sbjct: 684 VTVSFQCSPIYRVNYGLSSDCIYSINSESSLIDQRKAEEALSFVNNELSSEPIETI 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,717
Number of Sequences: 5004
Number of extensions: 60891
Number of successful extensions: 207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)