Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f06
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651     29   5.3  
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385...    28   7.0  
07_03_1494 - 26976654-26976749,26976945-26977001,26977644-269777...    28   9.2  

>01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651
          Length = 187

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 465 HLINELQVNLCTVETGPMINLAFIDGDFTTVIYSFIKGIVARTNSEKQNKREEKR 629
           H++  +   L   E G MI+ A +DGD       F+K ++A+   +++ + EEKR
Sbjct: 108 HVMANIGERLTDEEVGEMISEADVDGDGQINYEEFVKCMMAK---KRRKRIEEKR 159


>12_01_0486 +
           3854889-3855014,3855897-3856089,3856206-3856310,
           3856541-3856629,3856720-3856872,3857047-3857181,
           3857293-3857459,3858193-3858287,3858495-3858868,
           3859101-3859374,3859464-3859531
          Length = 592

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 468 LINELQVNLCTVETGPMINLAFIDGDFTTVIYSFIKGIVARTNSEKQNKR 617
           L NE + ++CT+E        F D    +  + F  G V  T+   +NKR
Sbjct: 106 LRNEERGSICTLELDSKKVQQFSDAIDNSYWFEFFMGFVGETDKNNENKR 155


>07_03_1494 -
           26976654-26976749,26976945-26977001,26977644-26977712,
           26977892-26977993,26978081-26978149,26979205-26979297,
           26979908-26979959,26980549-26980635,26980720-26980802,
           26980909-26981040,26981132-26981205,26981280-26981341,
           26981428-26981513
          Length = 353

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +3

Query: 444 THDDVTMHLINELQVNLCTVETGPMINLAFIDGDFTTVIYSFIKGIVAR--TNSEKQNKR 617
           T +DV + + N   V+    +TG      F D  F   IY  +  ++A   T+S ++   
Sbjct: 185 TKEDVILEMKNAYAVSRLRKKTG-YTKKEFYDQAFK--IYKEVNTLMAHGDTSSLRKILT 241

Query: 618 EEKRSFINNELKKKRN 665
           E   S I NELKK+++
Sbjct: 242 ERMHSTIKNELKKRQS 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,874,033
Number of Sequences: 37544
Number of extensions: 318669
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)