Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f06
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)                       29   3.1  
SB_9212| Best HMM Match : RVT_1 (HMM E-Value=4.5e-36)                  29   4.1  
SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_46446| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3)              28   7.1  
SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)                 28   9.4  
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
          Length = 883

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 570 IKGIVARTNSEKQNKREEKRSFINNELKKKRNEILNEALNGV 695
           I+G +A+   E+  + EE R+ + NEL+ +  +I     NG+
Sbjct: 738 IQGEIAKLLQEQAKRHEELRASLTNELENRTVKIPENTRNGI 779


>SB_9212| Best HMM Match : RVT_1 (HMM E-Value=4.5e-36)
          Length = 449

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 312 LYMYLIDEKLMYDCEYCYNRDIETLYVVARRNKNDKLNI 428
           LY YL D  ++++C+ C+     TL  +        LNI
Sbjct: 244 LYKYLKDNNILHECQSCFRSQYSTLNSLIEATNEWFLNI 282


>SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 213 NLKHHKMDVESKIKEDMSSLGCKSEKKISLAYHLYMYLIDEKL-MYDCEYC 362
           N   H  +V S+++    +  C S  + +L    Y Y + +K+ +Y C +C
Sbjct: 203 NDSQHPQEVLSQVQSVQDASACASYSEQNLHTFTYKYRVPDKVKLYGCSHC 253


>SB_46446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 549 TTVIYSFIKGIVARTNSEKQNKREEKRSFINNELKKKRNEILNEALNGV 695
           TT   +    ++    +   N  ++K S + +++KKK  EIL E L GV
Sbjct: 233 TTTTGTDTGSVITSLEAPASNVGQKKFSLVFHQMKKKSPEILAELLTGV 281


>SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3)
          Length = 743

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 579 IVARTNSEKQNKREEKRSFINNELKKKRNE 668
           ++    S+++ +R E+ +F+  ELKK RNE
Sbjct: 571 LLTEEESKRRKERFERDTFLREELKKGRNE 600


>SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)
          Length = 222

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 477 ELQVNLCTVETGPMINLAFIDGDFTTVIYSFIKGIVART 593
           E Q  L    +GP  +LA +  DFT  + + + G +A+T
Sbjct: 62  ETQARLRDAVSGPPTDLATVSDDFTKRVINGVTGALAKT 100


>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2123

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/64 (21%), Positives = 34/64 (53%)
 Frame = +3

Query: 357  YCYNRDIETLYVVARRNKNDKLNIYVPVATHDDVTMHLINELQVNLCTVETGPMINLAFI 536
            Y  N D ET+++    N+  + ++Y+   ++ D +   ++EL  +L  ++     ++ ++
Sbjct: 1433 YELNSDCETVWIKVSINR--RKHVYIGAFSNPDSSCEALDELDRSLSKLQRKSGNSVIYL 1490

Query: 537  DGDF 548
             GDF
Sbjct: 1491 GGDF 1494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,006,521
Number of Sequences: 59808
Number of extensions: 433403
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)