Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2f06
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83122-4|CAB05602.2|  664|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF067607-7|AAF98613.1|  433|Caenorhabditis elegans Serpentine re...    28   8.2  

>Z83122-4|CAB05602.2|  664|Caenorhabditis elegans Hypothetical
           protein R11A5.7 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 405 NKNDKLNIYVPVATHDDVTMHLINELQVN 491
           N +DK  + + V+ HD+ ++HLI +LQ+N
Sbjct: 29  NTDDKYAL-IHVSAHDEQSLHLIKQLQLN 56


>AF067607-7|AAF98613.1|  433|Caenorhabditis elegans Serpentine
           receptor, class t protein59 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 603 KQNKREEKRSFINNELKKKRNEILNEALNGVVVDD 707
           +QN   +  +F N +  KK NEI +E LN +   D
Sbjct: 393 EQNNTPKSSAFDNPKFDKKSNEIESEKLNHISASD 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,017,465
Number of Sequences: 27780
Number of extensions: 336086
Number of successful extensions: 1051
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)