Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2f04
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 32 0.079
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 29 0.42
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 29 0.55
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 29 0.73
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.73
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 27 2.2
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 27 3.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.0
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 27 3.0
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 3.9
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 3.9
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 26 5.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.2
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 9.0
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 31.9 bits (69), Expect = 0.079
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +2
Query: 176 AIGTPEVGVVDFNMLQ---TVLHCLA--QQLRVLGKNVELKGSITLPIGRDNTQTIAISE 340
A+G +G + +N LQ T+L+ + QQ V K +EL G LP G++ T+AI
Sbjct: 717 AMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQN--ATVAIMS 774
Query: 341 YV-VDTED 361
Y D ED
Sbjct: 775 YSGYDIED 782
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 29.5 bits (63), Expect = 0.42
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 431 LVVERIKKSLSPLRSPTREHSPVPIQSRGA-ASPTPQEKLSLVTLSKFNTLESTVEDLKN 607
L E I ++L L P H + +Q G PQE LVTL +N +S++ DLK
Sbjct: 444 LTHEIILENLDNLYDPD-SHVHLILQELGEPCKSVPQEDNCLVTLPLYNRWDSSIPDLKQ 502
Query: 608 RV 613
+
Sbjct: 503 NL 504
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 29.1 bits (62), Expect = 0.55
Identities = 26/103 (25%), Positives = 42/103 (40%)
Frame = +2
Query: 83 SDINFFNTNLSNKMTAEDTSVLLNIGEMIDLAIGTPEVGVVDFNMLQTVLHCLAQQLRVL 262
+ +N +T SN ++ + S + E ID +I P V L V+
Sbjct: 91 TSLNGSDTISSNFLSKYEYSNGTSTSEFID-SISPPLVNETSTISSSKKLEQNYSVTEVI 149
Query: 263 GKNVELKGSITLPIGRDNTQTIAISEYVVDTEDKDKTAPLKPE 391
N+ S+TLPI D + T A + +D+ +KT E
Sbjct: 150 DTNIITSSSVTLPISEDGSSTSAAA--TIDSNIDEKTVAFSEE 190
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 28.7 bits (61), Expect = 0.73
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +2
Query: 260 LGKNVELKGSITLPIGRDNTQTIAISEYVVDTEDKDKTAPLKPEIDVSPVTSEPDTILVV 439
L NV+L LP TQ + + ++ +T L +D PV+S PD + +
Sbjct: 233 LNVNVDLSPFPNLPATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQL 292
Query: 440 ERIKKSLSPL 469
E S S L
Sbjct: 293 ESNPDSFSRL 302
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.73
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 383 KPEIDVSPVTSEPDTILVVERIKKSLSPLRSPTREHSPVPIQSRGAAS-PTPQEKL 547
KP + V PV P T V L P+ PT + PVP S A S TP+ +
Sbjct: 1202 KPSVGVPPVPP-PSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSV 1256
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = +2
Query: 356 EDKDKTAPLKPEIDVSPVTSEPDTILVVERIKKSLSPLRSPTREHSPVPIQSRGAASPTP 535
+D +APL + SP + V ++ P+ P+ + P+P+ S P P
Sbjct: 988 KDHPPSAPLSKPVSTSPAAPLA-RVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIP 1046
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 280 QLYVFTQDT*LLCQAVQDRLEHIEVYNSDLWSANC*IYH 164
++ + D+ LL +D L H+EVY + N ++H
Sbjct: 138 EMQILPTDSLLLAARTEDNLSHVEVYVYEPTEENLYVHH 176
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 177 AKSIISPILRRTLVSSAVILFDKFVLKKLISENCIKLNNKLQNYFFVFNKFENLSKHYL 1
A +IS ++SS V L DK + + + K + +Q+Y +K +NL HYL
Sbjct: 519 ASILISSQDLSVVISSLVNLLDKLIREDYV----FKELSSIQSYISSHDKSKNLDLHYL 573
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 458 LSPLRSPTREHSPVPIQSRGAASP 529
LSP RSP R SP+ + S A P
Sbjct: 214 LSPTRSPARTPSPIRLYSSDALRP 237
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = +2
Query: 341 YVVDTEDKDKTAPLKPEIDVSPVTSEPDTILVVERIKKSLSPLRSPTREHSPVPIQSR-- 514
Y+V+ ++ ++ PE + T EP + V+++ K S + P + +
Sbjct: 501 YIVEEQEVEEPVETSPEEEAEKKTDEPVKMRKVKKLVKVADLSVSVQEDRLPTEVLEKYR 560
Query: 515 -GAASPTPQEKLSLVTLSKFNTLESTVEDLKNRV 613
+KL T+ + N LE + D + ++
Sbjct: 561 EAEHQMIATDKLVAETVDRKNALEEYIYDTRAKL 594
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 172 FSNWHSRGRSCRLQYAPN 225
FS+W +G RL+Y PN
Sbjct: 551 FSHWEMKGVPLRLEYGPN 568
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +2
Query: 86 DINFFNTNLSNKMTAEDTSVLLN--IG-EMIDLAIG 184
D NFF++++SN+ TAED + IG +DL+ G
Sbjct: 192 DPNFFSSDISNQGTAEDKDCFADCKIGLSWLDLSTG 227
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 335 SEYVVDTEDKDKTAPLKPEIDVSPVTSEPDTILVVERIKKSLSPLRS-PTREHSPVPIQS 511
S VV++ +KD+ + E + S PD+ + S+S R+ P R S
Sbjct: 188 SSVVVESGEKDEPVVVTEEKTMVSPPSRPDSTSTTKSKTSSISSARARPIRASSRPTASK 247
Query: 512 RGAASP 529
GA+ P
Sbjct: 248 LGASRP 253
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 509 SRGAASPTPQEKLSLVTLSKFNTLESTVEDLKNRV 613
S+ A + + KL TLSK + LE+ +E LKN+V
Sbjct: 966 SQSQAITSVKSKLD-ETLSKSSKLEADIEHLKNKV 999
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 347 VDTEDKDKTAPLKPEIDVSPVTSEPDTILVVERIKKSLSPLRSPTR 484
+ E D +P KPEI TS+P + R KS S R+ TR
Sbjct: 291 IKLEHSDNNSPSKPEIPFRHPTSKPLPPKPLSR-SKSSSLSRNQTR 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,852
Number of Sequences: 5004
Number of extensions: 49931
Number of successful extensions: 184
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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