Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2f04
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23) 48 5e-06
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044) 40 0.002
SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51) 39 0.003
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_47446| Best HMM Match : DUF16 (HMM E-Value=4.1) 32 0.33
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 32 0.33
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 31 0.77
SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 31 0.77
SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 30 1.3
SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_52812| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_51925| Best HMM Match : DIX (HMM E-Value=0.75) 28 5.4
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 28 5.4
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13) 28 7.2
SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11) 28 7.2
SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08) 28 7.2
SB_17357| Best HMM Match : IMS (HMM E-Value=0) 27 9.5
>SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23)
Length = 734
Score = 48.4 bits (110), Expect = 5e-06
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Frame = +2
Query: 149 LNIGEMIDLAIGTPEVGVVDFNMLQTVLHCLAQQ--LRVLGKNVELKGSITLPIGRDNTQ 322
L + +++DL++ TPEVGVV+FN L +LH + L GKN+ + P+ T+
Sbjct: 6 LELHKLVDLSLRTPEVGVVNFNHLHKLLHAILDHIGLGYDGKNITKVYASKSPVSESKTR 65
Query: 323 TIAISEYVVDTEDKDKTAPLKPEIDVSPVTSEPDTILVVERIKKS 457
T SE ++ D A + E + +E T++ + KS
Sbjct: 66 TDHTSEAEDVKDEGDTKATNETEKEKEYAGTEESTVVSEQETLKS 110
>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
Length = 933
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = +2
Query: 140 SVLLNIGEMIDLAIGTPEVGVVDFNMLQTVLHCLAQQLRVLGKNV 274
SV + + +++D+A+ TPE+G V+FN+L+ LH + + L + K V
Sbjct: 2 SVRVELQQLVDIALATPEIGNVNFNILRGFLHEILKHLGIRKKVV 46
>SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)
Length = 976
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/84 (25%), Positives = 49/84 (58%)
Frame = +2
Query: 149 LNIGEMIDLAIGTPEVGVVDFNMLQTVLHCLAQQLRVLGKNVELKGSITLPIGRDNTQTI 328
+++ +++D+AI +PE+G V+F L+ +LH L + + G+ + I P G ++++
Sbjct: 3 VSLTDLLDMAI-SPEIGPVNFFHLRNLLHTLLEHFDI-GEIEAQQAEIVAPGGYESSEES 60
Query: 329 AISEYVVDTEDKDKTAPLKPEIDV 400
D+E ++++ +PEI++
Sbjct: 61 ESGSENSDSETENESEQSEPEIEI 84
>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Frame = +2
Query: 140 SVLLNIGEMIDLAIGTPEVGVVDFNMLQTVLHCLAQQLRVLGKNVE------LKGSIT-L 298
+V + + +++ LA+GTPEVG V+FN+L +L + + L + K E L+G+I L
Sbjct: 2 TVQVELEQLLGLALGTPEVGAVNFNILHGILREILKHLGIDKKVTEISEDGGLRGAIAIL 61
Query: 299 PIGRDNTQTIAISEYVVDTEDKDKTAP 379
+ Q I +E +K K+ P
Sbjct: 62 KSANEGRQDIEKTETDSGQTEKVKSEP 88
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 332 ISEYVVDTEDKDKTAPLKPEIDVSPVTSEPDTILVVERIKKSLSPLRSPTREHSP 496
++ Y D + KT PL E++VSP + I + +L PL S T +SP
Sbjct: 175 LNGYSQDGNECIKTTPLNEELEVSPGAEDGSEISTIFDHSSTLEPLISETVPYSP 229
>SB_47446| Best HMM Match : DUF16 (HMM E-Value=4.1)
Length = 371
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Frame = +2
Query: 449 KKSLSPLRSPTREHSPVPIQSRGAA-------SPTPQEKLSLVTLSKFNTLESTVEDLKN 607
K+ +SPL+ T + +PIQS G P E+ + +T +++ + +++ N
Sbjct: 130 KRKISPLKDKTEQKQSLPIQSEGETPEERKVDQPMGNEEKTTMTHREYSVTDGNIDERDN 189
Query: 608 RVYGSMP 628
R++ P
Sbjct: 190 RMHRQEP 196
>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 697
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 458 LSPLRSPTREHSPVPIQSRGAASPTPQEKLSLVTLSKFNTLES 586
+SPL SPT++ +P+P+ S P PQ+ +L + T+ S
Sbjct: 345 MSPLSSPTQQVNPIPLNS--PILPAPQQNNTLQNIQNLLTISS 385
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 368 KTAPLKPEIDVSPVTSEPDTILVVERIKKSLSPLRS-PTREHS-PVPIQSRGAASPTPQ 538
+T +P I P P T+L+V +K +P ++ P +E S P+P R P P+
Sbjct: 54 RTKKAEP-IGAPPTKLRPPTVLIVRPLKTGTTPRKNIPDQERSLPIPTPRRNIPYPQPK 111
>SB_64| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 320
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 368 KTAPLKPEIDVSPVTSEPDTILVVERIKKSLSPLRS-PTREHS-PVPIQSRGAASPTPQ 538
+T +P I P P T+L+V +K +P ++ P +E S P+P R P P+
Sbjct: 54 RTKKAEP-IGAPPTKLRPPTVLIVRPLKTGTTPRKNIPDQERSLPIPAPRRNIPYPQPK 111
>SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +2
Query: 377 PLKP-EIDVSPVTSEPDTILVVERIKKSLSPLRSPTREHSPV-PIQSRGAASPTPQEKLS 550
P+K DVSP+ + P + +E +SP+++ E SP+ I S + T +S
Sbjct: 142 PIKTTHTDVSPIETTPSEVSPIETTPSEVSPIKTTHSEVSPIETIPSEVSPIETTPSVVS 201
Query: 551 LV--TLSKFNTLESTVEDL 601
+ T S+ + +E+T D+
Sbjct: 202 PIKTTPSEVSPIETTPFDV 220
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 377 PLKP-EIDVSPVTSEPDTILVVERIKKSLSPLRSPTREHSPV 499
P+K DVSP+ + P + +E +SP+++ E SP+
Sbjct: 222 PIKTTHTDVSPIETTPSEVSPIETTPSEVSPIKTTHSEVSPI 263
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 452 KSLSPLRSPTREHSPVPIQSRGAASPTPQEKLSLVTLSKFNT 577
++LSP R TR +P P ++G + P P + L TLS T
Sbjct: 3052 RTLSPTR--TRAFAPYPPHAQGLSHPMPHTHIGLCTLSPRRT 3091
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 452 KSLSPLRSPTREHSPVPIQSRGAASPTPQEKLSLVTLSKFNT 577
++LSP R TR +P P ++G + P P L TLS T
Sbjct: 3148 RTLSPTR--TRAFAPYPPHAQGPSHPIPHTHKGLRTLSPTRT 3187
>SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 504 IGTGECSRVGLRNGDKLFLILSTTKIVSGSEVTGDTSI 391
IG G+C+ GL D L + +T IVS + + G +I
Sbjct: 387 IGEGDCNEAGLEGPDGLAFLPDSTLIVSDAPLEGVQAI 424
>SB_52812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Frame = +2
Query: 395 DVSPVTSEPDTILVVERIKKSLSPLRSPTREHSPVPIQSRGAASP---TPQEKLSLVT-- 559
+VSP+ + P + +E +SP+++ E SP+ + SP TP E + T
Sbjct: 30 EVSPIETTPSEVSPIETTHSEVSPIKTTPSEVSPIE-TTPSEVSPIETTPSEVSPIKTTH 88
Query: 560 --LSKFNTLESTVEDLKNRVYGSM 625
+S T + V ++ R G +
Sbjct: 89 SEVSPIKTTRTDVSPIETRPTGGI 112
>SB_51925| Best HMM Match : DIX (HMM E-Value=0.75)
Length = 256
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/98 (21%), Positives = 39/98 (39%)
Frame = +2
Query: 311 DNTQTIAISEYVVDTEDKDKTAPLKPEIDVSPVTSEPDTILVVERIKKSLSPLRSPTREH 490
+N Q + + + TA +VSP+ + P + ++ +SP+ + E
Sbjct: 158 ENQQEVVRKKAEESESASESTATEATPSEVSPIETTPSEVSPIKTTPSEVSPIETTPSEV 217
Query: 491 SPVPIQSRGAASPTPQEKLSLVTLSKFNTLESTVEDLK 604
SP+ + SP K + +S T S V +K
Sbjct: 218 SPIK-TTHSEVSPI---KTTPSEVSPIKTTHSEVSPIK 251
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Frame = +2
Query: 269 NVELKGSITLPIGRDNTQTIAISEYVVDTEDKDKTAPLKPEIDVSPVTSEPDTILVV-ER 445
NV++ S+T+P+ IA S + + + P K P P + V +
Sbjct: 890 NVDIPPSVTMPVSEGGYMVIADSPSMATPKKRGPGRPRKYPPKEKPAKVVPPPVEVSRDE 949
Query: 446 IKKSLSPLRS-------PTREHSPVPIQSRGAASPTPQEKL 547
+ +SP P R+HSP + + S QE +
Sbjct: 950 VSSVMSPTGKVVSSSDVPPRKHSPPCVSQSSSLSVPVQEPI 990
>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
Length = 1072
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Frame = +2
Query: 293 TLPIGRDNT-QTIAISEYVVDTEDKDKTAPLKPEIDVSPVTSEPDTILVVERIKKSLSPL 469
TLP+ D T + + + + ++ D SP E D KS
Sbjct: 403 TLPMQEDPAIATQPVQPKPQEVDSSSAGSSVQTSNDSSPAPQEDDKSSSATEEYKSEPSS 462
Query: 470 RSPTREHSPVPIQSRGAASPTPQE 541
P+ SP P + + ASP P +
Sbjct: 463 AQPSANQSPEPEEEKEEASPVPSK 486
>SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)
Length = 1166
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Frame = +2
Query: 260 LGKNVELKGSITLPIGR-DNTQTIAISEYVVDTEDKDKTAPLKPEI------DVSPVTSE 418
+ K++ + + L +G N IS Y + K +T P+KP I D+ P +
Sbjct: 224 VNKSLPIIETFNLALGPVTNNNNSDISTYEEEKFSKAETGPMKPIIDIKKPTDIKPSPAT 283
Query: 419 PDTILVVERIKKSLSPLRS 475
D + V + K +PL S
Sbjct: 284 KDAVKVTGKEGKQTAPLSS 302
>SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)
Length = 219
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 533 PQEKLS-LVTLSKFNTLESTVEDLKNRVYGSMP 628
P EKLS L +L FN + V+D KN+V+ +P
Sbjct: 103 PLEKLSNLKSLDLFNCEVTNVDDYKNKVFELIP 135
>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
Length = 990
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 311 DNTQTIAISEYVVDTEDKDKT-APLKPEIDVSPVTSEPDTILVVERIKKSLSPLRSPTRE 487
DN+ +I+ V + + +D+ APL P++D S PD++ + K + SP P R
Sbjct: 697 DNSLCNSIAGDVSNRQSRDEEKAPLSPDVDKMQCFSPPDSLPPLP--KFTPSPTGYPCRT 754
Query: 488 HSPVPIQSRGAAS 526
++S G S
Sbjct: 755 GVNQGVESSGNVS 767
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,107,528
Number of Sequences: 59808
Number of extensions: 359732
Number of successful extensions: 1147
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -