Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2f01
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.11
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 30 0.34
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 29 0.80
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 28 1.4
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 27 3.2
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 4.2
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 4.2
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 5.6
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 7.4
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 25 9.8
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 263 LTTIPVTVFIQTTSFKQLSTSHRFVLITASRCFECG 156
+ +P+TV I T SF +S+ + F+++T + CG
Sbjct: 204 ILVLPLTVLILTLSFNSVSSENMFLMMTVQFFYVCG 239
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 29.9 bits (64), Expect = 0.34
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 592 PHPSNRNALLLHGRNRQGDGTSP 660
PHP N +LL G N Q D +SP
Sbjct: 97 PHPENSKIVLLMGSNAQNDPSSP 119
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 28.7 bits (61), Expect = 0.80
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 207 NEPPFRPYHRVSLLRMWLLPIHSIFIGSNDALQD*SR 97
+EPP P H+ + + L P H++ S+D ++ S+
Sbjct: 104 HEPPIPPLHKTGVFSVPLQPTHTVNSNSDDGYENSSK 140
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 464 QAIKKKLSVFAKYLFKLQSYPLTYESS 384
Q I+K + FA+++ Q YPLTY+++
Sbjct: 441 QCIQKLEAAFARFVDNQQIYPLTYDNT 467
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = -2
Query: 214 NYQRATVSSLSPRLVASNVVVANTFDIYWK*RRASRLITSD 92
N+Q T+S+L + + VV+ +F+I W +R ++LIT++
Sbjct: 320 NWQ-GTISTLPMIAMFTGVVIGGSFNIMWN-QRYAKLITAN 358
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -1
Query: 461 AIKKKLSVFAKYLFKLQSYPLTYESS*ILLRIYGGKRSWRRQTRQTFGK*FNKLLQIL 288
A++ + + L + P+ ES+ L ++Y W R+ ++ FGK N L+IL
Sbjct: 992 ALRPSIDEVKEALASAEKLPILSESTVTLQKMYDVVLEWIRRGKRLFGK-ANAPLEIL 1048
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 56 IPIISIDDYKETI*RDQS*SASLLPI-NIECIGNN 157
IP++++D Y+ T D+ S + P+ N EC G N
Sbjct: 287 IPVLNVDGYEYTWSNDRLWSKNRQPLNNSECFGIN 321
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 142 MYWQQPHSKQRDAVIRT 192
MY Q HSK RDA+I T
Sbjct: 510 MYLQTSHSKLRDAIIST 526
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 427 YLAKTLSFFFIAWMGGR 477
Y+A +SF F+AW+ R
Sbjct: 332 YIAGVISFLFVAWLSDR 348
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 380 SKKIRTLTDTIVI*ISIWQKH*VFFLLLGWVDELTAH 490
S KI+T+ I I + QK +FF L ++D+ T H
Sbjct: 411 SLKIKTIYPDI---IKLEQKEKLFFSFLSYIDQHTGH 444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,802
Number of Sequences: 5004
Number of extensions: 57442
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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