Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2e24
         (671 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4QAP1 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_A4KT34 Cluster: Sensor protein; n=11; Francisella tular...    35   1.6  
UniRef50_UPI0000ECCC4D Cluster: Shugoshin-like 1 (hSgo1) (Serolo...    33   4.8  
UniRef50_Q5ULR1 Cluster: Recombinase A; n=1; Lactobacillus phage...    33   4.8  
UniRef50_Q7PGM2 Cluster: ENSANGP00000022657; n=1; Anopheles gamb...    33   4.8  
UniRef50_A7S2C8 Cluster: Predicted protein; n=1; Nematostella ve...    33   4.8  
UniRef50_A6C6W9 Cluster: Probable type 4 prepilin-like proteins ...    33   6.3  
UniRef50_Q7UYT6 Cluster: Probable alkylhalidase; n=1; Pirellula ...    33   8.3  
UniRef50_Q4FM29 Cluster: Nitrogen assimilation regulatory protei...    33   8.3  

>UniRef50_A4QAP1 Cluster: Putative uncharacterized protein; n=1;
            Corynebacterium glutamicum R|Rep: Putative
            uncharacterized protein - Corynebacterium glutamicum
            (strain R)
          Length = 1733

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
 Frame = +1

Query: 133  IGIAYNYYVERINKRISSTSLSYDSGDEANDTRVPYEQKSDEGNILDEIFTIVPDSESPV 312
            + +A+    ++I +      ++++S  E ND     +  ++  ++ DE  T   D E PV
Sbjct: 1036 VAVAFEISADQIAEYAGEKLVAFESLFELNDDVKSEDPVAEHRDVEDEAQTFTVD-ELPV 1094

Query: 313  VNKMMNS---VEFSDVNFIPASGGSTV 384
             + ++ +   VE SDV  +P SGG+ +
Sbjct: 1095 ADPVIGTSVAVEGSDVKVLPVSGGTVI 1121


>UniRef50_A4KT34 Cluster: Sensor protein; n=11; Francisella
           tularensis|Rep: Sensor protein - Francisella tularensis
           subsp. holarctica 257
          Length = 475

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
 Frame = +1

Query: 55  IGKKILIS**STMAETSGIIIFMLWYIGIAYNYYVERINKRISSTSLSYDSGDEANDTRV 234
           I ++I+      +A T  ++I  ++YI     + +ERINKR++   ++    ++ N+  +
Sbjct: 168 ISRQIIFKFALLLASTYIVLIGFIYYILKTALHPLERINKRVA--KINPRKNEKLNEDVI 225

Query: 235 PYEQKS--DEGNILDEIF 282
           PYE KS  D+ N+L E F
Sbjct: 226 PYEIKSIVDQINLLIEKF 243


>UniRef50_UPI0000ECCC4D Cluster: Shugoshin-like 1 (hSgo1)
           (Serologically defined breast cancer antigen NY-BR-85).;
           n=4; Gallus gallus|Rep: Shugoshin-like 1 (hSgo1)
           (Serologically defined breast cancer antigen NY-BR-85).
           - Gallus gallus
          Length = 644

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 184 STSLSYDSGDEANDTRVPYEQKSDEGNILDEIFT 285
           ST LS   GD  +   VPY++KS +GN +DE  T
Sbjct: 422 STELSDTEGDSDDSLYVPYKKKSKKGNSVDETGT 455


>UniRef50_Q5ULR1 Cluster: Recombinase A; n=1; Lactobacillus phage
           LP65|Rep: Recombinase A - Lactobacillus phage LP65
          Length = 405

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 16/54 (29%), Positives = 32/54 (59%)
 Frame = +1

Query: 223 DTRVPYEQKSDEGNILDEIFTIVPDSESPVVNKMMNSVEFSDVNFIPASGGSTV 384
           D R+     +D+G + D I T++P  +  +V+ + +S   ++V  +P+SG ST+
Sbjct: 16  DKRITKYSDTDQGRVKDYIPTLIPALDKNLVSGIPSSGRVTEVFGLPSSGKSTL 69


>UniRef50_Q7PGM2 Cluster: ENSANGP00000022657; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000022657 - Anopheles gambiae
           str. PEST
          Length = 801

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 495 SRKPVFKCRHLQFETSMYSFLELTLHASEILF 590
           +RKP  KCR+L F     +FLEL  +A++ LF
Sbjct: 212 ARKPSMKCRNLHFTFQTSTFLELPSNATKALF 243


>UniRef50_A7S2C8 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 454

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +1

Query: 163 RINKRISSTSLSYDSGDEAND----TRVPYEQKSDE--GNILDEIFTIVPDSESPVVNKM 324
           R+N+R+  TS++YD  +  ND    + +   +++D   G    E          PVVN++
Sbjct: 84  RMNERLYQTSITYDHNNSMNDNADVSDIEPSRQTDNLTGECSSEATRETIWESIPVVNRV 143

Query: 325 MNSVEFS 345
           MNSV F+
Sbjct: 144 MNSVRFT 150


>UniRef50_A6C6W9 Cluster: Probable type 4 prepilin-like proteins
           leader peptide processing enzyme; n=1; Planctomyces
           maris DSM 8797|Rep: Probable type 4 prepilin-like
           proteins leader peptide processing enzyme - Planctomyces
           maris DSM 8797
          Length = 425

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 127 WYIGIAYNYYVERINKRISSTSLSYDSGDEANDTRVPYEQKSD 255
           W +GI   Y  E I +  S+  L+Y SG+  N+T+  +++ +D
Sbjct: 364 WMLGIPLYYDEEWIEEWTSADQLTYQSGENVNETQGRWDRNTD 406


>UniRef50_Q7UYT6 Cluster: Probable alkylhalidase; n=1; Pirellula
           sp.|Rep: Probable alkylhalidase - Rhodopirellula baltica
          Length = 462

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 200 TILVTKQTIPVFHMNKSLMKETYW 271
           T+L+ +  +P FH+ +SLM E YW
Sbjct: 61  TLLIERDPVPRFHVGESLMPECYW 84


>UniRef50_Q4FM29 Cluster: Nitrogen assimilation regulatory protein
           ntrX; n=2; Candidatus Pelagibacter ubique|Rep: Nitrogen
           assimilation regulatory protein ntrX - Pelagibacter
           ubique
          Length = 451

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 19/88 (21%), Positives = 40/88 (45%)
 Frame = +1

Query: 133 IGIAYNYYVERINKRISSTSLSYDSGDEANDTRVPYEQKSDEGNILDEIFTIVPDSESPV 312
           I +   Y+ E+I+   +   LS D+ ++            +  N+++ I  + PDS   +
Sbjct: 316 IPLLVEYFSEKISINYNLKKLSIDTNNKYLLNYDWPGNVRELRNLIERIAILAPDSTDKI 375

Query: 313 VNKMMNSVEFSDVNFIPASGGSTVPASE 396
            N +  S++  D+  IP+    ++P  E
Sbjct: 376 SNIIKESLKTPDIRNIPSENSLSIPLKE 403


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,772,459
Number of Sequences: 1657284
Number of extensions: 11334566
Number of successful extensions: 30568
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30556
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)