Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2e24
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)                  33   0.16 
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)                   29   4.5  
SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06)                   29   4.5  
SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2)                    28   6.0  
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      28   6.0  
SB_23559| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
          Length = 500

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +1

Query: 163 RINKRISSTSLSYDSGDEAND----TRVPYEQKSDE--GNILDEIFTIVPDSESPVVNKM 324
           R+N+R+  TS++YD  +  ND    + +   +++D   G    E          PVVN++
Sbjct: 134 RMNERLYQTSITYDHNNSMNDNADVSDIEPSRQTDNLTGECSSEATRETIWESIPVVNRV 193

Query: 325 MNSVEFS 345
           MNSV F+
Sbjct: 194 MNSVRFT 200


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 271  DEIFTIVPDSESPVVNKMMNSVEFSDVNFIPASG-GSTVPASETISIAADD 420
            D+    V  S +PV NK+ ++++  D +   ASG G T PAS   SI + +
Sbjct: 1628 DKFEDAVISSPTPVNNKLKDALKLLDASDASASGSGVTPPASYKTSIVSGE 1678


>SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)
          Length = 908

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 343 KTQQNSSFYLLQEILNLVRL*KSHPVCFLHQTFVHMEHGYRLLRHQNRKIKM*RKFS 173
           KT Q +S ++  ++  + R    HP  +LH  F  M   +R L +   KI + RK++
Sbjct: 107 KTSQENSQFIYIDLRGVSRAHNKHPGYWLHSAFASMPTQHREL-YTIAKISIQRKYN 162


>SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06)
          Length = 484

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 343 KTQQNSSFYLLQEILNLVRL*KSHPVCFLHQTFVHMEHGYRLLRHQNRKIKM*RKFS 173
           KT Q +S ++  ++  + R    HP  +LH  F  M   +R L +   KI + RK++
Sbjct: 410 KTSQENSQFIYIDLRGVSRAHNKHPGYWLHSAFASMPTQHREL-YTIAKISIQRKYN 465


>SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2)
          Length = 267

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 133 IGIAYNYYVERI---NKRISSTSLSYDSGDEANDTRVPYEQKSDEGNILD 273
           +G+  N +VER    ++ I + SL   +G++    RV  +     GNILD
Sbjct: 14  LGVELNRFVERFYIESRAIDTESLCIVAGEKVWSVRVDIQVLDHSGNILD 63


>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 181 SSTSLSYDSGDEANDTRVPYEQKSDEGNILDEIFTIVPDSESPVVNKMMNSV 336
           +ST    D GD+ ND +    +KSDE N +  +  +    ++ + N+ +N++
Sbjct: 164 NSTGNEIDQGDDTNDRKKLERKKSDEANRI-SVSKLKNIFDTAIANESVNAL 214


>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 108 YYYLHALVHRDRVQLLRGAH*QENFLYI 191
           YYY+H   + D+    RGAH   N++++
Sbjct: 16  YYYIHLKYNNDKRSKYRGAHTSCNYIHL 43


>SB_23559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 175 RISSTSLSYDSGDEANDTRVPYEQK-SDEGNILDEIFTIVPDSESPVVN 318
           RIS  SL+++SG+  ND    +  K  DEG  LD   +   D E  V++
Sbjct: 159 RISEESLAHNSGELENDPGNGFNPKGGDEGTPLDAKKSAQGDPELGVIS 207


>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 268 LDEIFTIVPDSESPVVNKMMNSVEFSDVNFIPASGGST 381
           L EIF+ V  +  P+ N    SVE  D+++IP    ST
Sbjct: 459 LAEIFSSVKLTPIPLSNNPTPSVESDDMDYIPTKDTST 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,462,183
Number of Sequences: 59808
Number of extensions: 352513
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)