Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2e18
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 226 2e-59
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 173 9e-44
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 98 7e-21
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 83 2e-16
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 67 1e-11
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 64 1e-10
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 62 4e-10
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 52 5e-07
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017) 48 1e-05
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 47 2e-05
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 44 9e-05
SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0) 44 2e-04
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 42 7e-04
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 38 0.008
SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24) 37 0.014
SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8) 37 0.014
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_31103| Best HMM Match : CC (HMM E-Value=8.3) 29 5.0
SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_36855| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_42488| Best HMM Match : ig (HMM E-Value=4.2e-06) 28 8.8
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 226 bits (552), Expect = 2e-59
Identities = 93/127 (73%), Positives = 112/127 (88%)
Frame = +2
Query: 107 ELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFV 286
EL K PVEGFSAGL DD D+YKWE++++GPP T YE G+FKA + FPKEYP RPP + F+
Sbjct: 343 ELQKKPVEGFSAGLFDDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFI 402
Query: 287 TEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISMLADPNDES 466
++IWHPN+ KNG+VCISILHEPG+DK+GYEKA ERW P+HTVETI++SVISMLA+PNDES
Sbjct: 403 SDIWHPNVHKNGEVCISILHEPGEDKYGYEKADERWRPIHTVETIMLSVISMLAEPNDES 462
Query: 467 PANVDAA 487
PANVDAA
Sbjct: 463 PANVDAA 469
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 173 bits (422), Expect = 9e-44
Identities = 76/142 (53%), Positives = 105/142 (73%), Gaps = 3/142 (2%)
Frame = +2
Query: 89 LKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRP 268
L+ +L +L + PVEGF+ + D+++ ++W+V I GPP TLY GG+FKAH++FP +YP P
Sbjct: 1129 LQLELKKLTEEPVEGFTVEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYPYSP 1188
Query: 269 PRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISMLA 448
P +F+T++WHPNI ++GDVCISILH P DD E SERW P V TIL+SVIS+L
Sbjct: 1189 PTFRFLTKMWHPNIYESGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLN 1248
Query: 449 DPNDESPANVDAA---KEWRES 505
+PN SPANVDA+ ++WRE+
Sbjct: 1249 EPNTFSPANVDASVMFRKWRET 1270
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 97.9 bits (233), Expect = 7e-21
Identities = 48/153 (31%), Positives = 82/153 (53%)
Frame = +2
Query: 98 QLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRM 277
+L EL K+ + F +D+++I W+ LI+ P Y G F+ + FP EYP +PP++
Sbjct: 1 ELDELRKSGTKTFRDVKVDESNILYWQGLIV-PEMPPYNKGAFRIEICFPAEYPFKPPKI 59
Query: 278 KFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISMLADPN 457
F T+I+HPNID+ G VC+ I+ + E W P E ++ ++++++ DP
Sbjct: 60 TFKTKIYHPNIDEKGQVCLPII------------SPENWKPATKTEQVIQALLALVHDPE 107
Query: 458 DESPANVDAAKEWRESYSEFKRKVAQCVRKSQE 556
E P D A+E+ + +F + C +K E
Sbjct: 108 PEHPLRADLAEEYSKDKKKFMKNAEDCTKKYGE 140
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 83.4 bits (197), Expect = 2e-16
Identities = 38/127 (29%), Positives = 66/127 (51%)
Frame = +2
Query: 185 IIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDDK 364
+IG T Y G FK + P+ YP PP+++FVT I+HPNID +G +C+ L P
Sbjct: 2 LIGAEGTPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMP---- 57
Query: 365 WGYEKASERWLPVHTVETILISVISMLADPNDESPANVDAAKEWRESYSEFKRKVAQCVR 544
W P + ++L +++ ++A+PN + P + + E++ + ++F K +
Sbjct: 58 -----PKGMWKPALNISSVLSTILILMAEPNPDDPLMAEISNEFKYNKAQFLEKAKEWTL 112
Query: 545 KSQEDCS 565
K D S
Sbjct: 113 KFAMDPS 119
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 67.3 bits (157), Expect = 1e-11
Identities = 43/142 (30%), Positives = 69/142 (48%)
Frame = +2
Query: 89 LKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRP 268
++++L E+ +P SAG D D+Y+W I+GPP ++YEGG F ++FP +YP +P
Sbjct: 100 IQRELTEITLDPPPNCSAGPKGD-DLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKP 158
Query: 269 PRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISMLA 448
P+ G VC+ IL + W P T+ +L+S+ S+L
Sbjct: 159 PK---------------GMVCLDIL-------------KDSWSPALTISKVLLSICSLLT 190
Query: 449 DPNDESPANVDAAKEWRESYSE 514
D N P A + ++ SE
Sbjct: 191 DCNPADPLVGSIAALYVQNRSE 212
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Frame = +2
Query: 152 DDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTE-----IWHPNIDK 316
D +DI K LI GP DT YEGGFF + P +YP+RPPR+K +T ++PN+ +
Sbjct: 6 DKDDIPKIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLYR 65
Query: 317 NGDVCISIL 343
NG VC+SI+
Sbjct: 66 NGKVCLSII 74
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/103 (28%), Positives = 54/103 (52%)
Frame = +2
Query: 257 PLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVI 436
P PP+++FVT I+HPNID +G +C+ L P W P + ++L +++
Sbjct: 40 PFEPPKVRFVTPIYHPNIDSSGRICLDTLKMP---------PKGMWKPALNISSVLSTIL 90
Query: 437 SMLADPNDESPANVDAAKEWRESYSEFKRKVAQCVRKSQEDCS 565
++A+PN + P + + E++ + ++F K + K D S
Sbjct: 91 ILMAEPNPDDPLMAEISNEFKYNKAQFLEKAKEWTLKFAMDPS 133
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 62.1 bits (144), Expect = 4e-10
Identities = 25/62 (40%), Positives = 41/62 (66%)
Frame = +2
Query: 89 LKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRP 268
++++L E+ +P SAG D D+Y+W I+GPP ++YEGG F ++FP +YP +P
Sbjct: 140 IQRELTEITLDPPPNCSAGPKGD-DLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKP 198
Query: 269 PR 274
P+
Sbjct: 199 PK 200
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = +2
Query: 89 LKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRP 268
L ++ EL +N E + A ++DN +++W + GPPDT + GG + + P EYP++P
Sbjct: 15 LMREAKEL-RNATELYHAQPLEDN-LFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKP 72
Query: 269 PRMKFVTEIWHPNIDKNGDVCISI-LHEPGDDKWGYEKASERWLPVHTVETILISVISML 445
P + +T I K +C+S+ H P E W P ++ T+L+++I +
Sbjct: 73 PSIMLLTPNGRFEIGKK--ICLSMSAHHP-----------ETWQPSWSIRTVLMAIIGFM 119
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 52.0 bits (119), Expect = 5e-07
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +2
Query: 137 SAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRM 277
SAG D +Y+W I+GPP ++YEGG F ++FP +YP +PP++
Sbjct: 43 SAGPKGDK-LYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPPKV 88
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = +2
Query: 269 PRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISMLA 448
PR F+T+I+HPN+ KNG++C++ L + W P ++ +L++V +L
Sbjct: 144 PRF-FLTKIFHPNVAKNGEICVNTL-------------KKDWKPDLGIKQVLLTVKCLLI 189
Query: 449 DPNDESPANVDAAKEWRESYSEFKRK 526
PN ES N +A K E Y ++ ++
Sbjct: 190 VPNPESALNEEAGKLLLERYDDYSKR 215
>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
Length = 123
Score = 47.6 bits (108), Expect = 1e-05
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +2
Query: 158 NDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIW 298
+++++W + GPPDT + GG + + P EYP++PP + +T +W
Sbjct: 1 DNLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKPPSIMLLT-VW 46
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 182 LIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIWHPNID-KNGDVCISILHE 349
L I P D Y GG FK + ++YP PP + V I+HPN+D +G VC+S+L +
Sbjct: 41 LQITPTDGAYRGGQFKFSVK-TEDYPNTPPVPRCVNNIYHPNMDLDDGSVCLSLLDD 96
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 44.4 bits (100), Expect = 9e-05
Identities = 33/109 (30%), Positives = 51/109 (46%)
Frame = +2
Query: 182 LIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDD 361
L I P D Y GG FK + +YP P + T+I+HPN+D VC+S+L DD
Sbjct: 41 LQITPTDGAYRGGQFKFSVR-TTDYPNVAPSINCKTKIYHPNMDGYDGVCMSLL----DD 95
Query: 362 KWGYEKASERWLPVHTVETILISVISMLADPNDESPANVDAAKEWRESY 508
W + +E ++ ++ + +PN E P + +E E Y
Sbjct: 96 ----------WQASNDLEDLVQGLLFLFYNPNLEDPLSSLFEEESEEEY 134
>SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0)
Length = 446
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +2
Query: 368 GYEKASERWLPVHTVETILISVISMLA 448
GYE ++ERW PV +VE IL+SVISMLA
Sbjct: 2 GYESSAERWSPVQSVEKILLSVISMLA 28
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +2
Query: 155 DNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTEI---WHPNIDKNGD 325
D+DI++ V+I GP T Y+ G F + P YP PP +++ +PN+ ++G
Sbjct: 632 DHDIFR--VMIEGPAGTPYDHGLFAFDILLPANYPDAPPSFHYLSMCNGRLNPNLYEDGK 689
Query: 326 VCIS 337
VCI+
Sbjct: 690 VCIT 693
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 40.3 bits (90), Expect = 0.002
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 9/156 (5%)
Frame = +2
Query: 89 LKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLI--IGPPDTLY----EGG--FFKAHLNF 244
L K+ ++++ FSA L+DDN +++W V + I LY E G F ++ F
Sbjct: 739 LMKEFQDVSRKTERIFSAELVDDN-LFEWNVKLHTIDGDSLLYRDMVETGSKFILLNITF 797
Query: 245 PKEYPLRPPRMKFVT-EIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETI 421
P+ +P PP M+ + I + G +C+ +L G W +TVE +
Sbjct: 798 PENFPFAPPFMRVLAPRIEGGFVLDGGAICMELLTPKG------------WSSAYTVEAV 845
Query: 422 LISVISMLADPNDESPANVDAAKEWRESYSEFKRKV 529
++ + + A +E+ S +KR V
Sbjct: 846 VLQFSAAVVKGKGRIDRTCKKAFSKKEAESAYKRLV 881
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 131 GFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPR 274
G L+D+ K + I GPP+T +EGG + + P+ YP PP+
Sbjct: 676 GIKVELVDET-FTKLKGEIRGPPETPFEGGTYNLDIVIPETYPFNPPK 722
>SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)
Length = 48
Score = 37.1 bits (82), Expect = 0.014
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 389 RWLPVHTVETILISVISMLADPNDESPANVDAAKEWR 499
+W P + T+L+S+ ++L+ PN + P D A++W+
Sbjct: 2 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 38
>SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8)
Length = 55
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 152 DDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVT 289
D+N + L+ GP DT Y G F + FP YP PP +K +T
Sbjct: 1 DENRMDFARALVTGPVDTPYSRGCFVFDIFFPGTYPNVPPLVKLIT 46
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 179 VLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRM-KFVTEI 295
V GP T YEGG +K ++ P++YP + P + F EI
Sbjct: 52 VKFFGPVGTPYEGGVWKVRVDLPEKYPFKSPSIANFTIEI 91
>SB_31103| Best HMM Match : CC (HMM E-Value=8.3)
Length = 93
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 344 EVLICRHHHFYQYLDAIFQSQISSGVVSKDIPWEN 240
+VLI H H Y+ L ++ Q+ +G SK+ P+ N
Sbjct: 3 DVLIWAHEHSYEKLFRVYNQQMCNG--SKEAPYTN 35
>SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 203 TLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIWHPNIDKNGD 325
T++E + + YP +PP +KFV++I ++ G+
Sbjct: 1 TVFENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSKGE 41
>SB_36855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 344 EVLICRHHHFYQYLDAIFQSQISSGVVSKDIPWEN 240
+VLI H H Y+ L ++ Q+ +G SK+ P+ N
Sbjct: 3 DVLIWAHEHSYEKLFPVYNRQMCNG--SKEAPYTN 35
>SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 203 TLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIWHPNIDKNGD 325
T++E + + YP +PP +KFV++I ++ G+
Sbjct: 1 TVFENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSKGE 41
>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 50 QL*LMSEPQSSLLLKKQLAELNKNPVE-GFSAGLIDDNDIYKWEVLIIGPP 199
+L L+ P++S K+ NKN GF L DDND Y W V + PP
Sbjct: 212 ELPLLLPPRNS---SKRSRHDNKNITHYGFWLCLRDDNDDYHWTVENVIPP 259
>SB_42488| Best HMM Match : ig (HMM E-Value=4.2e-06)
Length = 464
Score = 27.9 bits (59), Expect = 8.8
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Frame = +2
Query: 152 DDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIWH-PNIDKNGDV 328
D++ I + +I+ PD Y G F N P R FV + H P ID+
Sbjct: 305 DEDFIQATDGIIVERPDVDYHSGMFLCISN----NPFGTARKYFVVNVPHAPEIDRANTP 360
Query: 329 CISILHEPGDDKW-------GYEKASERW 394
+ IL +PG + GY + S RW
Sbjct: 361 KV-ILRKPGPSTFTVYFKHLGYPEPSIRW 388
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,235,368
Number of Sequences: 59808
Number of extensions: 493039
Number of successful extensions: 1160
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -