Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2e17
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0658 + 19275129-19275363,19275453-19275544,19276440-192765... 186 2e-47
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 182 3e-46
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 181 4e-46
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 115 3e-26
03_04_0085 - 17182662-17182963,17183044-17183101,17183564-171836... 31 0.69
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 31 1.2
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693... 30 1.6
08_01_0843 - 8276619-8278991 29 2.8
>09_04_0658 +
19275129-19275363,19275453-19275544,19276440-19276509,
19276617-19276735,19277026-19277122,19277229-19277308,
19277443-19277637,19277727-19277810,19277931-19277991,
19278682-19278742,19279162-19279255,19279357-19279429,
19279834-19279916,19280008-19280154
Length = 496
Score = 186 bits (453), Expect = 2e-47
Identities = 86/175 (49%), Positives = 122/175 (69%)
Frame = +1
Query: 166 IKELQTILRDKNTSRSDFKFYADRLIRLVIEESLNKLPYTECEVVTPTGAIYKGLKYGAG 345
I+ + T++RD++ + DF FY+DRLIRLV+E L LP+TE +++TPTG+IY G+++
Sbjct: 297 IRGMHTLIRDRDITTPDFVFYSDRLIRLVVEHGLGHLPFTEKQIITPTGSIYMGVEFCKK 356
Query: 346 NCGVSIVRSGEAMEQGLRDCCRSIRIGKILVESDTDTHEAHVVYAKFPEDIARRQVLLMY 525
CGVSIVRSGE+ME LR CC+ I+IGKIL+ D + ++Y K P DIA R VLL+
Sbjct: 357 LCGVSIVRSGESMENALRACCKGIKIGKILIHRVGDNGQ-QLIYHKLPMDIAERHVLLLD 415
Query: 526 PIMSTGNTVKQAVNVLKQHGVKEERIILSNLFCTPAAVQAVVDHVPKMKILTSEL 690
P++ TGN+ QA+ +L + GV EERII NL P +Q V P++KI+TSE+
Sbjct: 416 PVLGTGNSANQAIELLIRKGVPEERIIFLNLISAPEGIQCVCKRFPRLKIVTSEI 470
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 182 bits (442), Expect = 3e-46
Identities = 84/185 (45%), Positives = 125/185 (67%)
Frame = +1
Query: 136 SLTLLPSNDNIKELQTILRDKNTSRSDFKFYADRLIRLVIEESLNKLPYTECEVVTPTGA 315
+L ++ + I+ + TI+RD T+ DF FYADRLIRLV+E L LP+ E +V+TPTG+
Sbjct: 262 NLYVIQTTYQIRGMHTIIRDAATTTHDFIFYADRLIRLVVEHGLGHLPFKEKQVITPTGS 321
Query: 316 IYKGLKYGAGNCGVSIVRSGEAMEQGLRDCCRSIRIGKILVESDTDTHEAHVVYAKFPED 495
+Y G+++ CG+S++RSGE+ME LR CC+ I+IGKIL+ + D + ++Y P+D
Sbjct: 322 VYTGVEFSKRLCGISVIRSGESMENALRACCKGIKIGKILIHREGDNGK-QLIYHNLPKD 380
Query: 496 IARRQVLLMYPIMSTGNTVKQAVNVLKQHGVKEERIILSNLFCTPAAVQAVVDHVPKMKI 675
IA R VLL+ PI+ TGN+ QA+++L + GV+E II NL P V V P++KI
Sbjct: 381 IANRHVLLLDPILGTGNSAVQAISLLLKKGVQETNIIFLNLISAPQGVHVVSKRFPRVKI 440
Query: 676 LTSEL 690
+TSE+
Sbjct: 441 VTSEI 445
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 181 bits (441), Expect = 4e-46
Identities = 84/185 (45%), Positives = 125/185 (67%)
Frame = +1
Query: 136 SLTLLPSNDNIKELQTILRDKNTSRSDFKFYADRLIRLVIEESLNKLPYTECEVVTPTGA 315
+L ++ + I+ + TI+RD T+ DF FYADRLIRLV+E L LP+ E +V+TPTG+
Sbjct: 287 NLYVIQTTYQIRGMHTIIRDAATTTHDFIFYADRLIRLVVEHGLGHLPFKEKQVITPTGS 346
Query: 316 IYKGLKYGAGNCGVSIVRSGEAMEQGLRDCCRSIRIGKILVESDTDTHEAHVVYAKFPED 495
+Y G+++ CG+S++RSGE+ME LR CC+ I+IGKIL+ + D + ++Y P+D
Sbjct: 347 VYTGVEFSKRLCGISVIRSGESMENALRACCKGIKIGKILIHREGDNGK-QLIYHNVPKD 405
Query: 496 IARRQVLLMYPIMSTGNTVKQAVNVLKQHGVKEERIILSNLFCTPAAVQAVVDHVPKMKI 675
IA R VLL+ PI+ TGN+ QA+++L + GV+E II NL P V V P++KI
Sbjct: 406 IANRHVLLLDPILGTGNSAVQAISLLLKKGVQETNIIFLNLISAPQGVHVVSKRFPRVKI 465
Query: 676 LTSEL 690
+TSE+
Sbjct: 466 VTSEI 470
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 115 bits (277), Expect = 3e-26
Identities = 64/157 (40%), Positives = 93/157 (59%), Gaps = 10/157 (6%)
Frame = +1
Query: 250 VIEESLNKLPYTECEVVTPTGAIYKGLKYGAGNCGVSIVRSGEAMEQGLRDCCRSIRIGK 429
V+E L LP+TE ++VTPTG+ Y G+ + CGVSI+RSGE+ME LR CC+ I+IGK
Sbjct: 289 VVEHGLGHLPFTEKQIVTPTGSTYMGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGK 348
Query: 430 ILVESDTDTHEAHVVYAKFPEDIARRQVLLMYPIMSTGNT----VKQAVNVLKQHGVKEE 597
IL+ D D + ++Y KFP DIA R VLLM P++ TG+ +V G++
Sbjct: 349 ILIHRDGDNGQ-QLIYHKFPLDIAERHVLLMDPVLGTGSVEFIQCSFHSDVCLLVGMRTT 407
Query: 598 RI---ILSNLFCT---PAAVQAVVDHVPKMKILTSEL 690
+ + + + T P V V P++KI+TSE+
Sbjct: 408 EVTAKVSYHNYSTVQAPEGVHCVCKRFPRLKIVTSEI 444
>03_04_0085 -
17182662-17182963,17183044-17183101,17183564-17183638,
17183730-17183864,17183986-17184165,17184315-17184365,
17184537-17184637,17185562-17185620,17185701-17185816,
17186668-17186853,17187337-17187399,17187440-17187521,
17188221-17188312,17189153-17189296,17190056-17190136,
17190815-17190898,17191465-17191566,17191922-17192017,
17192239-17192299,17192418-17192521
Length = 723
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 79 IDQDIRQWDADDVKEQFGDSLTLLPSNDNIKELQTILRDKNTSRSDFK 222
++ +IRQ + D +++ G+S L+ +D I++ IL T + F+
Sbjct: 74 VENNIRQIELDSIQDYIGESENLVSLHDQIRDCDNILSQMETVLTGFQ 121
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 340 AGNCGVSIVRSGEAMEQGLRDCCRSIRIGKILVESDTDTHEAHV 471
AGN GVS +RS E + GL R++R+G + +D+ A V
Sbjct: 1200 AGNLGVSAIRSDERV--GLAGDARNLRLGTSMPNLSSDSASAQV 1241
>01_06_0393 +
28968873-28968918,28969048-28969084,28969165-28969384,
28969557-28969715,28969831-28969950,28972154-28972240,
28972329-28972418,28972516-28972602,28972761-28972877,
28972945-28973028,28973585-28975324,28975670-28975816,
28975998-28976431,28976523-28976667
Length = 1170
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 570 YIYSLFNCISCRHY---WVHEQHLSSCNVFWKLRIYNMSFMCVSITFY*D 430
Y++SL NC+ C Y WV + L V ++ ++++C+ I FY D
Sbjct: 48 YLFSLLNCLICLWYGLPWVADGRLLVATVNGIGAVFQLAYICLFI-FYAD 96
>08_01_0843 - 8276619-8278991
Length = 790
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 310 GAIYKGLKYGAGNCGVSIVRSGEAMEQGLRDCCRSIR 420
G ++KG+ +GN G+++ R E G R+ R +R
Sbjct: 514 GTVFKGVLTNSGNKGIAVKRLERMAEDGEREFQREVR 550
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,945,753
Number of Sequences: 37544
Number of extensions: 384311
Number of successful extensions: 931
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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