Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2e17
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55931| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)               34   0.13 
SB_15855| Best HMM Match : BNR (HMM E-Value=1.5)                       33   0.17 
SB_47933| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_42293| Best HMM Match : RVT_1 (HMM E-Value=0.0012)                  29   2.8  
SB_58413| Best HMM Match : GIY-YIG (HMM E-Value=0.31)                  28   6.5  
SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)                 28   6.5  
SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)                  28   8.6  

>SB_55931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/50 (42%), Positives = 37/50 (74%)
 Frame = +1

Query: 133 DSLTLLPSNDNIKELQTILRDKNTSRSDFKFYADRLIRLVIEESLNKLPY 282
           +SL+++     ++ L TI+R+K T+R DF FY+ RL+R++IE +L+ LP+
Sbjct: 162 NSLSIVEGTPQVRGLHTIIRNKMTTRDDFIFYSKRLMRILIEHALSLLPF 211


>SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)
          Length = 632

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 168 KRITNHTTGQEHKS**FQVLCGSSHSSGNRREF 266
           K+ITNHT  Q+HK       CG+ HS+GN R +
Sbjct: 205 KQITNHTRDQQHKE---CDRCGAKHSTGNCRAY 234


>SB_15855| Best HMM Match : BNR (HMM E-Value=1.5)
          Length = 287

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 109 DDVKEQFGDSLTLLPSNDNIKELQTILRDK 198
           D  K  FG  L ++  N+ ++ELQTILRD+
Sbjct: 258 DSRKVDFGPRLKIIKMNNQVRELQTILRDR 287


>SB_47933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 319 YKGLKYGAGNCGVSIV-RSGEAMEQGLRDCCRSIRIGKILVESDTD 453
           YK L YG  N  VSI  R+ E + +GL  CC  + I +IL+  +TD
Sbjct: 33  YKRLTYGI-NSAVSIFQRTIENVLKGLPGCC--VYIDEILITGETD 75


>SB_42293| Best HMM Match : RVT_1 (HMM E-Value=0.0012)
          Length = 326

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 319 YKGLKYGAGNCGVSIV-RSGEAMEQGLRDCCRSIRIGKILVESDTD 453
           YK L YG  N  VSI  R+ E + +GL  CC  + I +IL+  +TD
Sbjct: 100 YKRLTYGI-NSAVSIFQRTIENVLKGLPGCC--VYIDEILITGETD 142


>SB_58413| Best HMM Match : GIY-YIG (HMM E-Value=0.31)
          Length = 366

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 388 QGLRDC---CRSIRIGKILVESDTDTHEAHVVYAKFP 489
           QG   C   C ++++ K+L+   T  ++AHV+  K P
Sbjct: 93  QGTERCSAHCNTVQVYKVLLRDQTQVYQAHVLCNKRP 129


>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
          Length = 996

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 168 KRITN-HTTGQEHKS**FQVLCGSSHSSGNRREFE 269
           K+IT  HT  Q HK       CG+ HS+GN R +E
Sbjct: 30  KQITKRHTRDQHHKE---CGRCGAKHSTGNCRAYE 61


>SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)
          Length = 901

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 557 CLTVFPVDIIGYMSNTCRLAMSSGNFAYTT*ASCVSVSLSTKILPIRIDLQQS 399
           C   FP D I   + TC  A SS   +     +CVS  +   +  +R+ +Q+S
Sbjct: 786 CFHDFPADTIQNHAATCEPASSSTAVSPVPARNCVSSPVKDNMRDLRVVVQRS 838


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,693,353
Number of Sequences: 59808
Number of extensions: 480855
Number of successful extensions: 1170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)