Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2e16
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p... 172 4e-44
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 30 0.40
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 2.2
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 27 3.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.6
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 26 6.6
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 8.7
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 25 8.7
>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 184
Score = 172 bits (419), Expect = 4e-44
Identities = 77/175 (44%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Frame = +3
Query: 117 KFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKCHDHLEIMV 296
+F+ +E I G +KSS+Q+GI+A+L++ YP+L ID+++PKK +KC D L +
Sbjct: 7 RFNSREDIKGTTPIKSSIQRGIKAKLVQAYPNLKQVIDELIPKKSQLTQIKCEDRL-FLY 65
Query: 297 NSAGDLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAK 476
G+++ F+H +GP +P+L+L+HK P +VD+GAI+F+LSGANIM PGL S
Sbjct: 66 TLNGEIILFQHFDGPIIPSLRLVHKCPDAFTQVRVDRGAIKFLLSGANIMIPGLVSKGGN 125
Query: 477 MSPS-DKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCHYLNDGLWQ 638
+ +K Q V + AEGKE AIG+T +S +++ + NKG+G+EN HYL D LW+
Sbjct: 126 LPDDIEKDQYVIVTAEGKEAPAAIGLTKMSAKEMKETNKGIGIENVHYLGDNLWK 180
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 332 RGSLDANLKTTAQISVLRSDAAS*QR 409
RGS+D+NLKT + +LR D +S R
Sbjct: 62 RGSIDSNLKTNYVLELLRKDVSSLSR 87
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = -3
Query: 233 LVNVVVQMRVQFQKASPYALLDRGLELLHARYAFLFIK-LFKHIDVFV---AQLKITKKH 66
+V + + +++ P +G L+ Y LF+K L +V + A+ I KH
Sbjct: 89 IVESIDRFKIKKVVVDPLIATRKGALLVMPDYLELFVKELIPRAEVLIPNIAEALIILKH 148
Query: 65 KTNKLLENHRL 33
TN+ +E H L
Sbjct: 149 MTNEFVEIHHL 159
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 211 IWTTTLTRSYPRRIRLGLSNVTITS 285
+W T L++ P+R LG+ ++TI S
Sbjct: 333 MWATYLSQCLPKRAALGILSLTIVS 357
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = +3
Query: 114 KKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVK 269
+K + K ++ ++ ++++ IRA+LL + D ++ Q + + R+VK
Sbjct: 1126 QKNESKAALEQMKNYVTNIENNIRAKLLPSAANDDAWLSQNVVDESVTRVVK 1177
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/76 (22%), Positives = 27/76 (35%)
Frame = +3
Query: 369 KYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIG 548
K FF+ Q + +L +I+C A+ QV+ + H +G
Sbjct: 204 KRVFFMTPQTLQNDLKEHLLDAKSIICLIFDEAHRATGNHSYAQVMRAVLRSNSHFRVLG 263
Query: 549 ITTLSTEDIAKVNKGV 596
+T A V K V
Sbjct: 264 LTATPGSSTASVQKVV 279
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 377 VLRSDAAS*QRRYSLRAQRREHHVSGADFSQR 472
+LR D S +RR L+A+R + H S ++ Q+
Sbjct: 154 ILRLDEESAERRRVLQAERAKEHRSNSNDKQK 185
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 213 LDNYIDQILPKKDT--FRIVKCHDHLEIMVNSAGDLLFFRHREGPWMPTLKLL 365
LD YID ++P+ T R +K + + ++ ++AG + H + KL+
Sbjct: 194 LDEYIDLVIPRGSTNLVRHIKDNTKIPVLGHAAGLCSMYVHEDADMELASKLV 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,565
Number of Sequences: 5004
Number of extensions: 60278
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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