Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2e16
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0032 - 11795368-11795385,11795607-11795670,11795979-117960...   159   2e-39
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367...    48   6e-06
05_03_0095 - 8349971-8350171,8350659-8351303                           30   1.7  
03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319           29   3.0  
05_01_0474 - 3797926-3798609                                           29   5.2  
04_03_0811 - 19909128-19912214                                         28   6.9  
04_03_0436 + 15918144-15918377,15918514-15918717,15918813-15918911     28   6.9  
01_03_0188 - 13584435-13584626,13584899-13584979,13585262-135855...    28   6.9  
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335...    28   9.1  
08_01_1078 + 11045555-11045673,11045940-11045991,11046230-110462...    28   9.1  

>01_03_0032 -
           11795368-11795385,11795607-11795670,11795979-11796046,
           11796319-11796455,11796722-11796783,11796889-11796956,
           11797045-11797126,11798160-11798269
          Length = 202

 Score =  159 bits (387), Expect = 2e-39
 Identities = 89/194 (45%), Positives = 125/194 (64%), Gaps = 2/194 (1%)
 Frame = +3

Query: 78  DL*LCYKYINMFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTF 257
           +L LC +  ++   F   E IS   Q+K+SVQ+ IR  + + YP L+  +D +LPKK   
Sbjct: 26  ELVLCVRKDDVMFSF---EDISAQNQVKASVQRKIRQSIADEYPGLEPLLDDLLPKKSPM 82

Query: 258 RIVKCHDHLE-IMVNSAGDLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSG 434
            +VKC +HL  ++VN+    LFF  R+ P      ++ K+       QVD+GAI+FVLSG
Sbjct: 83  IVVKCQNHLNLVVVNNVP--LFFNIRDDP-----DIMKKF-------QVDRGAIKFVLSG 128

Query: 435 ANIMCPGLTSANAKMSPSDKGQV-VAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENC 611
           ANIMCPGLTS    +    + +  VAIMAEGK+HALAIG T +S +DI  +NKG+GV+N 
Sbjct: 129 ANIMCPGLTSPGGSLDVEVEEETPVAIMAEGKQHALAIGYTKMSAKDIKTINKGIGVDNM 188

Query: 612 HYLNDGLWQMKAVK 653
           HYLNDGLW+M+ ++
Sbjct: 189 HYLNDGLWKMERLE 202


>02_04_0233 -
           21135743-21135867,21135970-21136340,21136486-21136757,
           21137289-21137397,21137846-21138247,21138376-21138419,
           21138539-21138759,21140163-21140274,21140620-21140754
          Length = 596

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 14/191 (7%)
 Frame = +3

Query: 108 MFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHL-DNYIDQILPKKDTFRIVKCHDHL 284
           MFKK  +   +  +Q+L  + +K +R    E +P   D  +D ILP K    + K  + +
Sbjct: 1   MFKKHVD---VKALQRLSGADKKKLRRTAKERFPQASDADLDAILPPKVEVTVAKYPNRV 57

Query: 285 EIM-VNSAGDLLFFRHREGPWM-PT----------LKLLHKYPFFVPMQQVDKGAI-RFV 425
            +  +     +LF     G  + PT          +  L K P  +P   +  G + RF+
Sbjct: 58  LVYGIEGEFPMLFDIDGRGHELFPTEHSLTGENIAVYALWKVPDLLPAFTLKGGEVSRFI 117

Query: 426 LSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVE 605
           L GA++M PG++     +     GQ  ++   G    +A+G TT+S+ +  K   G   +
Sbjct: 118 LGGADLMFPGISIPPEGLPSFQPGQPWSVKVPGNPAPIAVGATTMSSNEALKA--GDSAD 175

Query: 606 NCHYLNDGLWQ 638
             +  N+G ++
Sbjct: 176 GRYVPNEGFYE 186


>05_03_0095 - 8349971-8350171,8350659-8351303
          Length = 281

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +3

Query: 381 FVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTL 560
           ++P  Q+D G  +++ +   +    +TS+    + S   Q + + A G   A A+G   L
Sbjct: 113 YIPAGQIDGGRTQYMATSFTVPAFAVTSSATAAASSSPAQTITVPASGPSPA-AVGAVAL 171

Query: 561 STE 569
             E
Sbjct: 172 QQE 174


>03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319
          Length = 317

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 339 PWMPTLKLLHKYPFFVPMQ---QVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVA 509
           P +P L L+H +      Q   QV   + RF +   +++C G +S+++   PS+  Q  A
Sbjct: 50  PRLPPLLLIHGFGPMATWQWRRQVGPFSRRFHIIVPDLLCFGASSSSSSPPPSESAQAAA 109

Query: 510 IM 515
           ++
Sbjct: 110 LL 111


>05_01_0474 - 3797926-3798609
          Length = 227

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 519 RPLWRQLDPCRSETSSRWLKSAPDT 445
           RP WR+  PC + +SS W  S+P +
Sbjct: 117 RP-WRRTSPCSTSSSSSWSYSSPSS 140


>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +3

Query: 123 DEKESISGVQQLKSSVQKGIRARLLELYPH---LDNYIDQILPKKDTFRIV 266
           D+K  ISG       V  G  A LL  + H   L N ID ILPK     I+
Sbjct: 303 DQKWHISGKCITNKEVSSGTTALLLSHFSHKPSLLNLIDNILPKLSCLSIL 353


>04_03_0436 + 15918144-15918377,15918514-15918717,15918813-15918911
          Length = 178

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +3

Query: 375 PFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGIT 554
           P    +++V  G+    +S   + C G+++ +    P  +  +VA++     HA+A G+T
Sbjct: 6   PATAAVRRVKLGSQGLEVSAQGLGCMGMSAFHGPSKP--EADMVALI----HHAVAAGVT 59

Query: 555 TLSTEDI 575
            L T DI
Sbjct: 60  LLDTADI 66


>01_03_0188 -
           13584435-13584626,13584899-13584979,13585262-13585513,
           13586552-13587310
          Length = 427

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = +1

Query: 319 SSGIARVPGCQP*NYCTNIRSSFRCSKLTKALFASCSAARTSCVRG*LQPTRRCLRATRV 498
           ++G+A +PGCQ  N  T I   +  +++  A +A   A RT    G + PTR C R   V
Sbjct: 227 ATGLA-IPGCQLHN--TAIPEDY--ARVQVAKYAIHEADRTGSPVGYIDPTRICKRQHTV 281

Query: 499 KL 504
           +L
Sbjct: 282 EL 283


>09_04_0330 +
           16731390-16731699,16731774-16732080,16732182-16733561,
           16734064-16734112
          Length = 681

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
 Frame = +2

Query: 326 ASRGSLDANLKTTAQISVLRSDAAS*QRRYSLRAQRREHHVSGAD-FSQREDVS---ERQ 493
           A  G    N++T    + L +      + +S + +   H  +    F   E+V+    RQ
Sbjct: 37  AGAGGFRDNVRTLLGFAHLEAGVHGETKCWSFQLELHRHPPTVVRLFVVEEEVAASPHRQ 96

Query: 494 GSSCRHNGRGERTCSSYRYHYSL 562
              CRH G G     S RYH+ L
Sbjct: 97  CHLCRHIGWGRHLICSKRYHFLL 119


>08_01_1078 +
           11045555-11045673,11045940-11045991,11046230-11046279,
           11047286-11047439,11048266-11048391
          Length = 166

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = -3

Query: 179 ALLDRGLELLHARYAFLFIKL 117
           AL+DRG E ++AR++ +F+KL
Sbjct: 50  ALVDRGSEFINARFSPVFLKL 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,471,740
Number of Sequences: 37544
Number of extensions: 409239
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)