Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2e16
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36827| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   9e-12
SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)                30   1.7  
SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05)               29   3.0  
SB_32953| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_33363| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_17283| Best HMM Match : rve (HMM E-Value=2.5e-35)                   28   7.0  
SB_10506| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)             28   7.0  
SB_12451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_36827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 30/50 (60%), Positives = 39/50 (78%)
 Frame = +3

Query: 120 FDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVK 269
           F  KE +SGV QLKSSVQ+GIRA++LE YP + +YI+ I+PKKD   +VK
Sbjct: 2   FQHKEDVSGVTQLKSSVQRGIRAKILEQYPAIADYINHIMPKKDALVVVK 51


>SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)
          Length = 263

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 394 CIGTKNGYLCSSFKVGIQGPSRCLKNSKSPALFTII 287
           CI T   YLC+  +  + GP  C+ +S S +   +I
Sbjct: 169 CINTHGSYLCTCVEPYVSGPGGCVLSSDSSSRVLVI 204


>SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05)
          Length = 1082

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 108  MFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKC 272
            +F+      S SG+   +  V++ +R RL  + PHL + I+    K+  ++ +KC
Sbjct: 891  LFRYRTTPHSTSGMSPAELMVKRQLRTRLSLVKPHLADAIENKQEKQKFYKDLKC 945


>SB_32953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -1

Query: 481 DIFALAEVSPGHMMFAPLSTKRIAPLSTCCIGTKNGYLCSSFKVGIQGPSRCLKNSKSPA 302
           D+  L E++ G         KR+  L TCC    +    S      QGPSR  +  +   
Sbjct: 36  DLTVLIELAKGECQTREYGQKRLLTLETCCGYEYDRTRKSMSSPNFQGPSRAHRTPQEVW 95

Query: 301 LFT 293
            FT
Sbjct: 96  CFT 98


>SB_33363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -1

Query: 481 DIFALAEVSPGHMMFAPLSTKRIAPLSTCCIGTKNGYLCSSFKVGIQGPSRCLKNSKSPA 302
           D+  L E++ G         KR+  L TCC    +    S      QGPSR  +  +   
Sbjct: 18  DLTVLIELAKGKCQTREYGQKRLLTLETCCGYEYDRTRKSMSSPNFQGPSRAHRTPQEVW 77

Query: 301 LFT 293
            FT
Sbjct: 78  CFT 80


>SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 339 PWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCP-GLTSANAKMSPSDKGQVVAIM 515
           P  PTL L H  P F P      G    VL   +  CP GL+ +   M      QVVA  
Sbjct: 295 PSHPTLALRHNMPMFYPFNFAYTGIFN-VLYMPSTQCPAGLSKSGLPMGV----QVVA-- 347

Query: 516 AEGKEH-ALAIGI 551
           A G++H  LA+ +
Sbjct: 348 ANGQDHLTLAVAM 360


>SB_17283| Best HMM Match : rve (HMM E-Value=2.5e-35)
          Length = 316

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +3

Query: 108 MFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKC 272
           +F+      S +G+   +  V++ +R RL  + PHL + I+    K+  ++ +KC
Sbjct: 125 LFRYRTTPHSTTGMSPAELMVKRQLRTRLSLVKPHLADAIENKQEKQKFYKDLKC 179


>SB_10506| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
          Length = 666

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +3

Query: 108 MFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKC 272
           +F+      S +G+   +  V++ +R RL  + PHL + I+    K+  ++ +KC
Sbjct: 475 LFRYRTTPHSTTGMSPAELMVKRQLRTRLSLVKPHLADAIENKQEKQKFYKDLKC 529


>SB_12451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 434 REHHVSGADFSQREDVSERQGSSCRHN 514
           RE  V  + F+Q+ED  E+QG   RH+
Sbjct: 32  REDRVMESSFAQKEDFLEQQGLPYRHH 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,999,274
Number of Sequences: 59808
Number of extensions: 497485
Number of successful extensions: 1628
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)