Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2e15
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0493 - 17770723-17770758,17770772-17770996,17771051-177720... 33 0.17
07_01_1012 - 8576196-8576489,8576809-8577045 31 1.2
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 29 3.6
10_08_0046 + 14411844-14413154,14413753-14413800,14413879-144139... 29 4.8
11_04_0266 - 15545781-15546266,15546620-15546814 28 6.3
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 28 6.3
01_05_0335 + 21074117-21074241,21074299-21074929,21075359-210753... 28 6.3
03_02_0723 + 10694128-10694793 28 8.3
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648... 28 8.3
>08_02_0493 -
17770723-17770758,17770772-17770996,17771051-17772033,
17772196-17772720,17772801-17772990
Length = 652
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 9 LIIE*SLV-KEIDIINANYLFDFANKNTSDNLSSTPIPLEVNNGGEN*DFSFLGIKNER 182
L+++ SL+ K +D++ +YL++ + +N PIP++++N G+ DF NE+
Sbjct: 392 LVLDPSLIPKVVDVVIGDYLYELTFRVEPENGPEEPIPMDMDNIGDG-DFEKKNDGNEK 449
>07_01_1012 - 8576196-8576489,8576809-8577045
Length = 176
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 304 QGTIEGTRP-RGRLPLRWTGSVKECTRKVARYARNGD 411
+GT EG + R + LRW+ +++ C R ++R +R D
Sbjct: 6 EGTCEGAQGCRMYMRLRWSPNLRRCVRSMSRLSRESD 42
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/43 (23%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 9 LIIE*SLVKEI-DIINANYLFDFANKNTSDNLSSTPIPLEVNN 134
L+++ SL+ ++ D++ ++L++ + + +N P+P+E+ N
Sbjct: 665 LVLDPSLIPDVVDVVIGDHLYELSFRVEPENRPEEPVPMEMEN 707
>10_08_0046 +
14411844-14413154,14413753-14413800,14413879-14413992,
14414218-14414496,14414602-14414715,14415210-14415282,
14415973-14416073
Length = 679
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 246 SVFAAPPLALVLQYDDCFGIWFVHFLFQEMKN-LNFPRHY*LPTGLELSSDYLMCFCLRN 70
S + P+ ++Q G W VH +E + L+ + P GL +DYL C C RN
Sbjct: 199 SELSVEPMVSIVQRSLLHG-WCVHGNAKEARRVLDDIKSSCTPLGLPSFNDYLHCLCHRN 257
Query: 69 QTSN 58
N
Sbjct: 258 LKFN 261
>11_04_0266 - 15545781-15546266,15546620-15546814
Length = 226
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +3
Query: 381 KGGEVREEWRHLVKRTTNRTDDHDHSVQIASD*EKLQFKDYALYSLGISFFIHQRIERIL 560
K +++ W L++ N ++ DHS + SD F D L F + ++ IL
Sbjct: 5 KAERLKKRWDELLEELINDHENDDHSCNLISDQNDEDFVDILLSVRQEYGFTREHVKAIL 64
Query: 561 E 563
+
Sbjct: 65 Q 65
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/43 (23%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 9 LIIE*SLVKEI-DIINANYLFDFANKNTSDNLSSTPIPLEVNN 134
L+++ SL+ ++ D++ ++L++ + + +N P+P+E+ N
Sbjct: 566 LVLDPSLIPDVVDVVIGDHLYELSFRVEPENGPKEPVPMEMEN 608
>01_05_0335 +
21074117-21074241,21074299-21074929,21075359-21075399,
21078458-21078560,21078755-21079601,21079938-21080689,
21080712-21080970,21081011-21081354
Length = 1033
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 9 LIIE*SLVKEI-DIINANYLFDFANKNTSDNLSSTPIPLEVNNGGEN*D 152
L+++ SL+ ++ D++ + L++ K +N P P++++N G+ D
Sbjct: 736 LVLDPSLIPDVVDVVIGDNLYELCFKVEPENGLDVPEPMDMDNSGDRED 784
>03_02_0723 + 10694128-10694793
Length = 221
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 465 SGQSGRGHQFG*WCASQDVAIPRVPRHLSCALLDGTGPS 349
+G+ GR WC V PR R L C+ DG G S
Sbjct: 166 AGEEGRER----WCPELLVTRPRTHRLLRCSATDGNGES 200
>03_02_0213 +
6480521-6480644,6482347-6482499,6482582-6482980,
6483158-6483234,6483990-6485312
Length = 691
Score = 27.9 bits (59), Expect = 8.3
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = +3
Query: 390 EVREEWRHLVKRTTNRTDDHDHS 458
E++ W+H++++ N +H+HS
Sbjct: 123 ELKNIWQHVIRKKFNENKEHEHS 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,101,948
Number of Sequences: 37544
Number of extensions: 410888
Number of successful extensions: 1033
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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