Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2e12
         (688 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F602 Cluster: Endoplasmic reticulum protein; n=1; Bom...    37   0.40 
UniRef50_Q6B969 Cluster: Nucleocapsid protein; n=92; Tospovirus|...    36   0.70 
UniRef50_Q9KKR7 Cluster: Methyl-accepting chemotaxis protein; n=...    36   1.2  
UniRef50_Q9W0M4 Cluster: CG13887-PB, isoform B; n=9; Endopterygo...    36   1.2  
UniRef50_A2FLI4 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_UPI0000D55D3F Cluster: PREDICTED: similar to tubulin, g...    33   4.9  
UniRef50_A7TSV0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_P29486 Cluster: Toxin coregulated pilus biosynthesis pr...    33   4.9  
UniRef50_Q018C1 Cluster: Chromosome 05 contig 1, DNA sequence; n...    33   6.5  
UniRef50_A0CBQ1 Cluster: Chromosome undetermined scaffold_165, w...    33   8.6  

>UniRef50_Q2F602 Cluster: Endoplasmic reticulum protein; n=1; Bombyx
           mori|Rep: Endoplasmic reticulum protein - Bombyx mori
           (Silk moth)
          Length = 210

 Score = 37.1 bits (82), Expect = 0.40
 Identities = 26/100 (26%), Positives = 53/100 (53%)
 Frame = +3

Query: 207 EVEKLILLSRVEKNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSPGSMKE 386
           E++  + L R ++N+ I GF++FL   TF ++ L++      E+ +++E ++      +E
Sbjct: 87  EMKTHVKLFRAQRNFYIIGFAIFL---TFVIRRLITMLIIQDELKQKAEKII---KQAEE 140

Query: 387 KKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIK 506
               +  +ILAN L+ +    Y+ I   N   E+ K ++K
Sbjct: 141 TVKQAKTSILANTLQSEELQHYDEI---NSQLEETKILLK 177


>UniRef50_Q6B969 Cluster: Nucleocapsid protein; n=92;
           Tospovirus|Rep: Nucleocapsid protein - Melon yellow spot
           virus
          Length = 279

 Score = 36.3 bits (80), Expect = 0.70
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = +3

Query: 258 AGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSPGSMKEKKMISNENILANLLRVK 437
           A F +  L +   +   LS  ASL  +C    PLV      KE+  I N +    + ++ 
Sbjct: 140 AKFDMTALRLMLCIGGPLSLLASLHSLCPVVLPLVYFQNVKKEQLGIKNFSTYEQICKIA 199

Query: 438 RSISYETIMFANDMREQFKTMIK 506
           R +S   + F  +  E FK+ +K
Sbjct: 200 RVMSASNMTFKKEFDELFKSCVK 222


>UniRef50_Q9KKR7 Cluster: Methyl-accepting chemotaxis protein; n=23;
           Gammaproteobacteria|Rep: Methyl-accepting chemotaxis
           protein - Vibrio cholerae
          Length = 666

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
 Frame = +3

Query: 213 EKLILLSRVEKNYIIAGFSLFLLVV----TFAVKALLSYTASLAEICRRSEPLVLSPGSM 380
           ++ + LS V++  IIAGF L LL++      +   +      L+E+  R+ PLV++   +
Sbjct: 5   DRFMGLSIVQR--IIAGFVLMLLLLILLGVISTLKIRGINDGLSEVSDRATPLVMAVAGL 62

Query: 381 KEKKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIKSM----DTPQSQEPLSSI 548
           KE    SN  +L      +     +      D + +F+ + + M    D+ +SQ+    +
Sbjct: 63  KEALQESNRWVLEFRTSEEAGELPQLSNKFKDQQARFRQLSQQMNALTDSTESQKQFQDV 122

Query: 549 VESTNGY 569
           +++TN +
Sbjct: 123 LQATNQF 129


>UniRef50_Q9W0M4 Cluster: CG13887-PB, isoform B; n=9;
           Endopterygota|Rep: CG13887-PB, isoform B - Drosophila
           melanogaster (Fruit fly)
          Length = 228

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
 Frame = +3

Query: 207 EVEKLILLSRVEKNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSPGSMKE 386
           E++  + L R ++N+ I+GF++FL +V   ++ L++   + A +  +SE       S   
Sbjct: 87  EMQHSMKLFRAQRNFYISGFAIFLALV---IRRLVNLICTQANLMAQSEASFKQAQSATA 143

Query: 387 KKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIKSMD-TPQSQEPLSSIVESTN 563
                 EN   N  + K +    T++  N +RE+ + +   ++   + +E + S  ES N
Sbjct: 144 AARSLLEN--KNTEKAKEAGEDTTLIELNKLRERVQELTSDLNREKKDKEAVKSQAESIN 201


>UniRef50_A2FLI4 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 2103

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
 Frame = +3

Query: 189 FSKNIYEVEKLILLSR-VEKNYIIAGFSLFLLVV-TFAVKALLSYTASLAEICRRSEPLV 362
           F +NI+ +  L+L  R ++K+   + + LFL  + TF  KA+    + +     +S   +
Sbjct: 8   FEQNIHPLTDLLLEYRSLKKSTNSSSYPLFLTQIPTFDKKAIQDIISKI-----KSGATL 62

Query: 363 LSPGSMKEKKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIKSMDTPQSQEPL 539
           +   +   K  I +EN L+N+L   +       +F + +     T++   DTP +Q+ L
Sbjct: 63  VDSFAPYIKSFIYDENTLSNILDACKECENPNQLFIDGVLMYALTLVLKSDTPNTQKTL 121


>UniRef50_UPI0000D55D3F Cluster: PREDICTED: similar to tubulin,
           gamma complex associated protein 2; n=1; Tribolium
           castaneum|Rep: PREDICTED: similar to tubulin, gamma
           complex associated protein 2 - Tribolium castaneum
          Length = 823

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +3

Query: 303 ALLSYTASLAEICRRSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFANDMR 482
           A+ SY   +AE  + SEP +L    +K+K +      +  L  + +  S  +++   D  
Sbjct: 48  AIQSYVQRIAEDLKNSEPFLLKFEDLKQKNVDCLGPYVQLLYHISQDSSVRSLLGKMDKH 107

Query: 483 EQFKTMIKSMDTPQSQEPL 539
            + KT I   D PQ +  L
Sbjct: 108 SEQKTEITRDDLPQVRNRL 126


>UniRef50_A7TSV0 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 533

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
 Frame = +3

Query: 171 NIIRLIFSKNIYEVEKLILLSRVEK--NYIIAGFS-LFLLVVTFAVKALLSYTASLA-EI 338
           N++RL+ ++ I E    + +   E+  N   +GF  L  +++    + L +   +L  E+
Sbjct: 345 NVLRLLATEIILERRSSLKIKSAEEFLNNFTSGFEYLKKIMMEHNDRQLATIQINLKKEL 404

Query: 339 CRRSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIK 506
           C + + +V      K KK+      L     +KR  + ETI   N+  E  KTM++
Sbjct: 405 CEQHDSIV-EEYEQKMKKIEKRNKSLKESFEIKRKENNETIRNINNEIEDLKTMLE 459


>UniRef50_P29486 Cluster: Toxin coregulated pilus biosynthesis
           protein I; n=14; Vibrio cholerae|Rep: Toxin coregulated
           pilus biosynthesis protein I - Vibrio cholerae
          Length = 620

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
 Frame = +3

Query: 201 IYEVEKLILLSRVEKNYIIAGFSLFLLVVTFAVKALLSYTAS-LAEICRRSEPLVLSPGS 377
           I ++++++   + +   IIAGFS F  V+   +  +LS   S + +I  R   L LS G 
Sbjct: 250 IIDIQQIVQTYKRDIQLIIAGFSGFSCVMLIGLYWVLSKELSGVRQI--REWILALSDGQ 307

Query: 378 MKEKKMISNENILANLLRVKRSISYETI-MFANDMREQFKTMIKSMDTPQSQE 533
           +KE++ I   N L  + +   ++ +  + +  N  R      IK  D   S E
Sbjct: 308 IKERRPIKFHNELDTIAQSLENLQFRLLDVVRNSHRTMNDLSIKQTDITYSIE 360


>UniRef50_Q018C1 Cluster: Chromosome 05 contig 1, DNA sequence; n=2;
           Ostreococcus|Rep: Chromosome 05 contig 1, DNA sequence -
           Ostreococcus tauri
          Length = 527

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 15/54 (27%), Positives = 32/54 (59%)
 Frame = +3

Query: 309 LSYTASLAEICRRSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFA 470
           + +   LAE+ RRS   V    + +++ ++S + +L+ L R++R   YET++ +
Sbjct: 363 IKHQDELAEVRRRSSHAVAVANTTEQELLLSRDRLLSELARMRRE-GYETVLLS 415


>UniRef50_A0CBQ1 Cluster: Chromosome undetermined scaffold_165,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_165,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 284

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +3

Query: 378 MKEKKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIKSMDTPQSQEPLSSIVES 557
           +KEK   + E ++  +L  K+ + YE     N   ++ + ++  M+T   +E   SIV S
Sbjct: 192 LKEKTAKNEELLIQQMLEEKQRLQYEIDELINGQEQKVQQLLSQMETTVMEEDEKSIVAS 251


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,051,781
Number of Sequences: 1657284
Number of extensions: 11843891
Number of successful extensions: 27595
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27592
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)