Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2e12
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    28   1.5  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    27   3.4  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   4.4  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     26   5.9  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.9  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    25   7.8  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 309 LSYTASLAEICRRSEPLVLSPGSMKEKKMISNEN--ILANLLRVKRSISYETIMFANDMR 482
           L Y   LA      EP   +PG +++  M  N+       L  ++ SIS+ + +F+N ++
Sbjct: 441 LKYVMDLATF---EEPYDFNPGQIEKFIMNGNKKGAFSIRLNHIENSISFSSDLFSNPIK 497

Query: 483 EQFKTMIKSMDTPQSQEPLSSIVESTNGYVL 575
                 ++S  +      L+ I +S +  ++
Sbjct: 498 SSDSVSLQSTPSELITSQLTRIAKSLSSVLM 528


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 122 CIILSCILFLQMILLLEHHTADIF*KHLRGRKTNLAESCRKELYN 256
           C+ LS IL L  ++++ H  +D   K      TNL  +   E++N
Sbjct: 47  CVFLSIILPLIFLVIIPHAQSDRKIKDTNMETTNLGVNIIDEIFN 91


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -3

Query: 320 RVRKQSFYRESYDQ*EQREPSNYIVLFDTTQQD*FFD---LVNVFRKYQPYDVPTTGSFV 150
           R R +  + E  D  E+ +PS    L+DT + D   +   L  +F  YQ   +P + S +
Sbjct: 652 RERWEKLFSEFCDS-EKADPSKVSELYDTLKYDALHNRQFLERIFTPYQYLKLPQSPSLI 710

Query: 149 GTE 141
             E
Sbjct: 711 AKE 713


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 454 RLLCLRTT*ENNLRL*SRAWI---RRRVKNPFLASWSLRMVTYYD*RVTFP 597
           R+L  R   ENNLR+ + AWI    + +K P   S  L M+ Y   ++ FP
Sbjct: 25  RILSTRDPKENNLRMQAFAWISTLSKTLKFPVRTS-GLAMLLYSRFQLFFP 74


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 663 SNIFAKKHCSRKNINWKTISFIGKSYTSIIVRNHS 559
           + + +K+H  RKNIN+  +     S  S  VR HS
Sbjct: 383 TGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRPHS 417


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 215 FDLVNVFRKYQPYDVPTTGSFVGTECN 135
           F L+N   +Y P  +  T  F+ T+CN
Sbjct: 101 FYLINSVMEYSPKIISFTSLFLATKCN 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,736
Number of Sequences: 5004
Number of extensions: 54559
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)