Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2e12
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          33   0.29 
SB_57619| Best HMM Match : DUF229 (HMM E-Value=0)                      30   2.0  
SB_55932| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_58759| Best HMM Match : MTS (HMM E-Value=4.5)                       29   4.7  
SB_37309| Best HMM Match : Toxin_29 (HMM E-Value=1.2)                  28   8.1  

>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -2

Query: 276 RTERTQQLYSSFRHDSARLVFRPRKCF*KISAV*CSNNRIICRNRMQL 133
           + E T +  S+F   S +  +R R+ F    +V CSN ++ C+NR QL
Sbjct: 482 QNEATGEATSAFTIGSFKPAYRVRRDFAIPPSVPCSNEKLSCKNRCQL 529


>SB_57619| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 616

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -3

Query: 350 APSAYFSQTCRVRKQSFYRESYDQ*EQREPSNYIVLFDTTQQD*FFDLVNVFRKYQPYDV 171
           APS    QT +     +YRE Y+    +   NY V   T+  D  F++      Y P+  
Sbjct: 532 APSRQV-QTFKGSDDMYYREIYEGDNPKGMCNYQVQLKTSPNDGIFEVTGYISSYSPHVN 590

Query: 170 P 168
           P
Sbjct: 591 P 591


>SB_55932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -3

Query: 491 KLFSHVVRKHNSLIRNRPFDA*QIG*YVFV*NHFFLFHRPRREHQRFAPSAYFSQTCRVR 312
           + ++HV   H SL+R R F    +        H F+ H P    +R+   A  + T  +R
Sbjct: 94  RYYAHVAITHTSLLRTRHFTHTSLLRTRRYYAHVFITHTPLLRTRRYYAHAAITHTSLLR 153

Query: 311 KQSFY 297
            + +Y
Sbjct: 154 TRRYY 158


>SB_58759| Best HMM Match : MTS (HMM E-Value=4.5)
          Length = 147

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 357 LVLSPGSMKEKKMISNENILANL 425
           L+L PG  K++K+I N  +LAN+
Sbjct: 62  LILQPGKAKQEKIIMNPPLLANI 84


>SB_37309| Best HMM Match : Toxin_29 (HMM E-Value=1.2)
          Length = 754

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = +3

Query: 297 VKALLSYTASLAEICRRSEP-LVLSPGSMKEKKM-ISNENILANLLRVKRSISYETIMFA 470
           + A+ S  A  + + + S+  LVL    + EKK  I+++NIL  L ++      +++M  
Sbjct: 430 INAMASLAAGRSYLTQNSDLILVLHSTLVAEKKTSITSDNILGALQKLSLRRRLQSVMIE 489

Query: 471 NDMREQFKTMIKSMDT 518
           ND+ +    +++  D+
Sbjct: 490 NDLIQWLVGLLEDHDS 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,367,693
Number of Sequences: 59808
Number of extensions: 379585
Number of successful extensions: 954
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)